Identification of chicken, duck, pigeon and pig
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肉及肉制品中猪、牛、羊、马、驴、鸡、鸭、鹅、兔源性成分的快速鉴定实时PCR法编制说明一、任务来源本标准由中华人民共和国商务部提出并归口,由商务部流通产业促进中心实验室生物检测室研究小组完成方法的建立优化、标准的起草制定工作。
二、编制依据本标准遵循GB/T1.1-2009《标准化工作导则第1部分:标准的结构和编写》、GB/T20001.4-2001《标准编写规则第4部分:化学分析方法》的编写规则、GB/T6379《测量方法与结果的准确度(正确度与精密度》第2部分:确定标准测量方法重复性与再现性的方法》。
三、目的和意义随着市场经济的不断深入发展,部分不法商贩为了谋求不正当利益,在肉(制)品中掺杂其他价格便宜的肉种,在肉(制)品市场出现了一种“以次充好、以假乱真”的现象。
通过实验室前期大量的调查研究分析,我们发现肉(制)品中掺杂、掺假的现象已经十分普遍,大部分肉(制)品中掺有标称以外的其他价格便宜的动物源性成分,有的甚至全部为标称以外的其他价格便宜的动物源性成分。
这极大地损害了消费者的利益,扰乱了流通市场秩序和健康发展,同时也对民族宗教信仰造成一定的潜在冲突。
但目前,相应的检测鉴定方法标准的缺失,使得检测监测机构对此无标可依,无法可循,难于判断和裁决。
为了规范国内市场流通秩序,保证市场的正当竞争,保护消费者的经济利益和对所购买商品的选择权、知情权及宗教信仰归属,制定本检测标准。
四、编制过程《肉及肉制品中猪、牛、羊、马、驴、鸡、鸭、鹅、兔源性成分的快速鉴定实时PCR法》该方法标准由商务部流通产业促进中心起草编写。
经过中国科学院微生物研究所、中国农业科学院饲料研究所、中国农业大学食品科学与营养工程学院三家单位进行了方法的复核验证实验,并提交了具体的复核验证报告。
根据国家有关标准制定和修订工作的要求,商务部流通产业促进中心在《肉及肉制品中猪、牛、羊、马、驴、鸡、鸭、鹅、兔源性成分的快速鉴定实时PCR法》的起草编制过程中,主要工作包括以下几个方面:1、详细查阅了国内、国外有关标准和相关专业期刊上发表过的参考文献等技术资料,如食品、化妆品和饲料中牛、羊、猪源性成分检测方法及动物源性饲料中哺乳动物源性成分定性检测方法等国内已申请的相关检验报告,并对这些资料进行了详细的对比,从方法的先进性、可靠性和实用性等几个方面考虑,选取了几个代表性的参考资料作为标准起草中的主要技术参考文本。
利用PCR技术鉴别畜禽肉中禽源性成分研究作者:张晶鑫樊艳凤唐修君贾晓旭高玉时顾荣陆俊贤王珏来源:《湖北农业科学》2016年第15期摘要:为了建立一种快速、特异的禽源性成分检测方法,以线粒体16S rRNA基因序列为靶位点设计鸡、鸽、鹌鹑特异性引物,以常见畜禽肉(包括羊肉、牛肉、猪肉、兔肉、鸽肉、鹌鹑肉、鸡肉、鸭肉、鹅肉等)DNA为模板,进行PCR扩增和特异性检测。
结果表明,筛选的引物能够有效地对动物源性成分进行检测,方便简洁,可快速鉴别畜禽肉食品中含有的鸡源性、鸽源性、鹌鹑源性成分。
关键词:禽源性成分;16S rRNA基因;PCR;鉴别中图分类号:TS251.5 文献标识码:A 文章编号:0439-8114(2016)15-4021-03DOI:10.14088/ki.issn0439-8114.2016.15.056Abstract: In order to establish a quick and specific peculiar method, which could identify the components of poultry origin. 16S rRNA gene sequence was use as target site, the specific primers of chicken, pigeon meat and quail meat were designed. The DNA of common livestock and poultry meat including mutton, beef, pork, rabbit meat, pigeon meat, quail meat, chicken, duck and goose were used as template. Though PCR amplification and specific detection, a quick determination method was established to identify the components of poultry origin. The results showed that the selected primer could identify the components of animal origin effectively and quickly. The method was convenient and concise, and could detect the chicken origin, pigeon origin and quail origin in poultry food quickly and accurately.Key words: components of poultry origin;16S rRNA gene;PCR;identification肉与肉制品掺杂、掺假是目前食品质量控制面临的重要挑战。
禽肉类产品检测项目下载温馨提示:该文档是我店铺精心编制而成,希望大家下载以后,能够帮助大家解决实际的问题。
文档下载后可定制随意修改,请根据实际需要进行相应的调整和使用,谢谢!并且,本店铺为大家提供各种各样类型的实用资料,如教育随笔、日记赏析、句子摘抄、古诗大全、经典美文、话题作文、工作总结、词语解析、文案摘录、其他资料等等,如想了解不同资料格式和写法,敬请关注!Download tips: This document is carefully compiled by the editor. I hope that after you download them, they can help yousolve practical problems. The document can be customized and modified after downloading, please adjust and use it according to actual needs, thank you!In addition, our shop provides you with various types of practical materials, such as educational essays, diary appreciation, sentence excerpts, ancient poems, classic articles, topic composition, work summary, word parsing, copy excerpts,other materials and so on, want to know different data formats and writing methods, please pay attention!禽肉类产品检测项目是当前食品安全领域的重要工作之一。
家禽品种识别总结引言家禽品种识别是近年来计算机视觉领域的一个热门研究方向。
随着深度学习技术的发展,基于深度学习的图像分类算法在家禽品种识别中取得了显著的成果。
本文将对家禽品种识别的方法和研究进展进行总结和讨论。
数据集在家禽品种识别任务中,选择合适的数据集对算法的性能至关重要。
常用的家禽数据集包括了多个常见的家禽品种,例如鸡、鸭、鹅等。
这些数据集通常包含大量的图像样本,而且每个品种都有多个角度和姿态的图像,以更全面地反映家禽的特征。
目前,常用的家禽数据集有 CIFAR-100 鸟类数据集、UCMerced Aerial Birds 数据集等。
特征提取特征提取是家禽品种识别的关键步骤,有效的特征表示能够提高分类算法的准确性。
传统的特征提取方法包括基于颜色、纹理和形状等特征的手工设计方法。
然而,这些方法的性能通常受限于特征的表达能力。
近年来,通过深度学习来提取图像的高级特征已成为主流。
卷积神经网络(Convolutional Neural Network,CNN)是当前最成功的深度学习模型之一。
CNN 可以自动学习图像中的特征表示,并具有很强的判别能力。
模型训练在家禽品种识别任务中,常用的模型训练方法是使用预训练的深度学习模型,并进行微调。
预训练模型是在大型数据集上训练得到的,通常包含大量的图像样本和对应的标签信息。
通过在预训练模型的基础上进行微调,可以快速地适应新的任务。
在微调过程中,固定模型的前几层,只更新后面的几层权重。
这样做的目的是保留预训练模型学到的通用特征,同时针对家禽品种识别任务进行特定的调整。
实验结果与分析在实验中,我们选择了 CIFAR-100 数据集作为训练集,其中包含鸟类的图像样本。
我们使用了预训练的 ResNet-50 模型,并进行微调。
实验结果表明,在我们的数据集上,微调的 ResNet-50 模型能够达到较高的识别准确率。
然而,我们也注意到家禽品种识别任务面临一些挑战。
首先,不同品种之间的外观差异较小,容易导致模型的混淆。
美国农业部提议对禽肉实施“基于HACCP的检验模型项目”
(HIMP)
佚名
【期刊名称】《湖北畜牧兽医》
【年(卷),期】2012(000)005
【摘要】据美国食品安全新闻网报道.2012年1月份.美国农业部食品安全检验局提议对禽肉实施“基于HACCP的检验模型项目”(HIMP)。
美国农业部表示.该项目的实施有望革新以往的检验体系.每年可预防5200起食源性疾病.3
年内可为纳税人节省9000万美元.这是一项互惠互利的举措。
然而该项目遭到了
一线检验人员以及部分消费者团体的反对.他们认为HIMP项目不仅有损食品安全.而且还会使得不合格的禽肉流向餐桌。
【总页数】1页(P46-46)
【正文语种】中文
【中图分类】TS201.6
【相关文献】
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2.美国:农业部提议对禽肉实施HIMP项目 [J],
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因版权原因,仅展示原文概要,查看原文内容请购买。
第1篇一、报告背景随着我国农业现代化进程的加快,禽类养殖产业在我国国民经济中的地位日益重要。
禽类识别技术在养殖、防疫、物流等领域发挥着重要作用。
本报告旨在总结禽类识别技术的发展现状、应用领域、挑战与对策,为我国禽类识别技术的进一步发展提供参考。
二、禽类识别技术概述1. 禽类识别技术定义禽类识别技术是指利用计算机视觉、图像处理、模式识别等手段,对禽类进行自动识别、分类和追踪的技术。
2. 禽类识别技术分类根据识别方法的不同,禽类识别技术可分为以下几类:(1)基于图像识别的禽类识别技术:通过对禽类图像进行预处理、特征提取、分类识别等步骤,实现对禽类的识别。
(2)基于生物特征的禽类识别技术:通过提取禽类的生物特征(如指纹、虹膜、耳纹等),实现对禽类的识别。
(3)基于声学特征的禽类识别技术:通过分析禽类的叫声,实现对禽类的识别。
三、禽类识别技术发展现状1. 图像识别技术随着深度学习、卷积神经网络等人工智能技术的发展,基于图像识别的禽类识别技术取得了显著成果。
目前,国内外学者已成功应用于鸡、鸭、鹅等禽类的识别。
2. 生物特征识别技术生物特征识别技术在禽类识别中的应用相对较少,但近年来,随着生物特征提取算法的优化,其在禽类识别领域的应用前景逐渐显现。
3. 声学特征识别技术声学特征识别技术在禽类识别中的应用主要集中在鸡的叫声识别,通过对鸡的叫声进行特征提取和分析,实现对鸡的品种、年龄、性别等信息的识别。
四、禽类识别技术应用领域1. 养殖领域禽类识别技术在养殖领域的应用主要包括:(1)自动识别禽类品种、年龄、性别等信息,提高养殖效率。
(2)监测禽类健康状况,为防疫提供依据。
(3)实现禽类个体追踪,便于管理和统计。
2. 物流领域禽类识别技术在物流领域的应用主要包括:(1)实现禽类自动化分拣,提高物流效率。
(2)追踪禽类运输过程,确保食品安全。
(3)辅助禽类溯源,提高消费者信心。
3. 科研领域禽类识别技术在科研领域的应用主要包括:(1)研究禽类生长发育规律,为育种提供依据。
Identification of chicken,duck,pigeon and pig meat by species-specific markers of mitochondrial originSantosh Haunshi a,*,Rantu Basumatary b ,P.S.Girish c ,Sunil Doley a ,R.K.Bardoloi b ,Ashok Kumar daMolecular Genetics Laboratory,Poultry Science Division,ICAR Research Complex for N.E.H.Region,Umroi Road,Umiam 793103,Meghalaya,India bAnimal Production Division,ICAR Research Complex for N.E.H.Region,Umroi Road,Umiam 793103,Meghalaya,India cNational Research Centre on Meat,Chengicherla,PB No.19,Uppal Post,Hyderabad 500039,AP,India dAnimal Health Division,ICAR Research Complex for N.E.H.Region,Umroi Road,Umiam 793103,Meghalaya,Indiaa r t i c l e i n f o Article history:Received 20December 2008Received in revised form 2May 2009Accepted 15June 2009Keywords:Chicken Duck Pigeon Pig PCRMitochondria Speciation Markera b s t r a c tIn the present study,PCR based method for meat species identification of chicken,duck,pigeon and pig was achieved by developing species-specific ing mitochondrial sequences species-specific primers were designed and the sizes of them were 256bp,292bp,401bp and 835bp for chicken,duck,pigeon and pig,respectively.The species-specific PCR products were sequenced to confirm the specificity of the product amplified.These markers were subsequently tested for cross amplification by checking them with beef,mutton,chevon,pork,rabbit,chicken,duck,turkey and pigeon meat.DNA markers devel-oped in this study can help identify the species of fresh,cooked and autoclaved meat of chicken,duck and pigeon and fresh and cooked meat of pig.The process of identification is simple,economical and quick as compared to other methods such as RAPD,PCR-RFLP and sequencing method of species identification.Ó2009Elsevier Ltd.All rights reserved.1.IntroductionFraudulent or unintentional mislabeling of food products,which could not be detected using conventional techniques is still prevalent across the world.Certain section of population does not like to consume the meat of pigeon and pet animals due to ethical and compassionate reasons.Some religious groups such as Muslim and Jewish do not accept pork in their diet.Vegetarians are another section of the society;they are totally against consumption of meat of any species.So,these groups of consumers demand methods to detect species (chicken,duck,pigeon,pork,etc.)of meat in the food.The species of meat present in processed,cooked or com-pounded mixtures is not always possible to identify by routine examination,and hence different analytical methods have been developed for meat species identification and to authenticate that the meat is genuine and acceptable to the consumers.Chemomet-rics is one such method which is valuable,rapid and non-destruc-tive method used for authentication of meat and meat products (Arvanitoyannis &Van Houwelingen-Koukaliaroglou,2003)and it was used for authentication of beef samples using mid infraredspectroscopy with a chemometric technique of soft independent modelling of class analogy (SIMCA)analysis (Al-Jowder,Defernez,Kemsley,&Wilson,1999)and meat of pig breeds using visible and near infrared spectroscopy with SIMCA chemometrics (Cozzolino,Vadell,Ballesteros,Galietta,&Barlocco,2006).How-ever,chemometrics may not be a good choice when it comes to the cooked or thermal processed meat samples.Therefore,DNA based methods are a way out for meat species identification and authentication of processed and cooked meats .There are numer-ous nuclear DNA based procedures available to identify precisely the origin of meat species such as DNA hybridization (Chikuni,Ozustume,Hoishi Kawa,&Kato,1990),cloth based hybridization array system for detection of species origin of meat meals in feed grains (Murphy,Armour,&Blais,2007),random amplified poly-morphic DNA polymerase chain reaction (RAPD-PCR)fingerprints (Calvo,Zaragoza,&Osta,2001;Koh,Lim,Chua,Chew,&Phang,1998;Lee &Chang,1994),species-specific satellite DNA probes (Buntjer,Nijman,Zijlstra,&Lenstra,1998).However,Rastogi et al.(2007)have concluded that mitochondrial markers were more efficient than nuclear markers (RAPD finger printing and Actin gene barcoding)in species identification and authentication Further,Eriksson et al.(2008)demonstrated that domestic chick-ens inherited the mitochondrial genome from red jungle fowl,therefore,it is possible to identify the species of domestic chicken0309-1740/$-see front matter Ó2009Elsevier Ltd.All rights reserved.doi:10.1016/j.meatsci.2009.06.026*Corresponding author.Tel.:+913642570305;fax:+913642570362.E-mail address:santoshi575@ (S.Haunshi).Meat Science 83(2009)454–459Contents lists available at ScienceDirectMeat Sciencejo ur na l h o me pa ge :w w w.e ls ev ie r.c o m/lo c a t e/me a t s ciirrespective of its genetic origin(monophyletic or polyphyletic) using DNA markers of mitochondrial genome.Therefore,PCR amplification and sequencing of cytochrome b(Forrest&Carnegie, 1994)and12S rRNA genes(Girish et al.,2004;Prakash,Patole, Ghumatkar,Nandode,&Yogesh,2000)of mitochondria were help-ful for meat species identification.Recently,restriction fragment length polymorphism(RFLP)of PCR products of cytochrome b and12S rRNA genes of mitochondria has been developed(Girish et al.,2005,2007;Meyer,Hofelein,Luthy,&Candrian,1995; Verkaar,Nijman,Boutaga,&Lenstra,2002).Although earlier methods proved to be accurate and useful in identification of species origin of meat but they suffer from certain disadvantages.While reproducibility of RAPD-PCR is a matter of concern due to requirement of high stringent conditions(Koh et al.,1998),sequencing of mitochondrial genes and PCR-RFLP pro-cedures are expensive,requires more time and more analytical work and interpretation of the results is somewhat complex.Fur-ther,intricacies involved in interpretation of the results of PCR-RFLP in admixture meat and meat products make the procedure unfeasible(Ilhak&Arslan,2007).Therefore,meat species identification through PCR amplifica-tion of D-loop sequence of mitochondria is gaining importance more recently(Mane et al.,2007).Identification of origin of meat species by PCR using species-specific markers of D-loop origin of mitochondria is relatively quick,precise,sensitive and economical as compared to other PCR based assays.Keeping these points in view the present study was carried out to develop PCR based pro-tocols for identification of meat of chicken,duck,pigeon and pigs using species-specific DNA markers of mitochondrial origin.2.Materials and methods2.1.Collection of blood and meat samplesBlood samples from chicken,duck,turkey and pigeon species were collected from either jugular or wing veins aseptically.Blood samples from Hampshire and Khasi-local varieties of pig were col-lected from anterior vena cava.Meat samples from cattle,sheep, goat,pig,rabbit,chicken,duck,turkey and pigeon were collected aseptically and randomly from Institute farm,local retail meat shops or slaughterhouses.Meat samples were either cooked at 80°C with a holding period of30min or autoclaved at121°C tem-perature,15-psi pressure for20min duration.Autoclaving is a sim-ulation of canning of meat and meat products.2.2.Extraction and purification of DNA from blood and meat samplesTotal DNA was initially extracted from whole blood of chicken, duck and pigeon and white blood cells of pig by phenol–chloro-form–isoamyl alcohol method(Sambrook&Russell,2001)for stan-dardization of amplification of species-specific markers.Total DNA from fresh,cooked and autoclaved meat samples of chicken,duck, pigeon,turkey,cattle,sheep,goat,pig and rabbit was extracted by PCI method as described by Girish et al.(2007).DNA samples were dissolved in nuclease free water and kept atÀ20°C until further use.2.3.Checking quality and purity of DNAThe quality of genomic DNA was checked by horizontal submar-ine agarose gel electrophoresis using0.8%agarose strength.The quantity of total DNA extracted from various sources was esti-mated by taking optical density(O.D.)readings at260nm and the purity of DNA was checked by taking ratio of O.D.readings at 260nm and280nm using spectrophotometer.2.4.Design and custom synthesis of species-specific primersMitochondrial D-loop DNA sequences of chicken,duck and pig and cytochrome b gene of pigeon were retrieved from Genbank ()and species-specific DNA primers were designed using computer software(DNA STAR).List of sequences of species-specific primers designed using computer software is given in Table1.2.5.Standardization of PCR procedures and sequencing of PCR productsPCR chemistry conditions like template concentration,primer concentration and PCR amplification conditions like denaturation,Table1Species-specific primers designed for the present study.S.No.Species Primer name Primer sequence Length base pair1Chicken GgD-For50-CTCGCCCTACTTGCCTTCC-30192GgD-Rev50-TAGGACGCAACGCAGGTGT-30193Duck ApD-For50-CACAATCTAAGCCTGGACAC-30204ApD-Rev50-TCGTCTTTAGTGCTGGAGTT-30205Pigeon ClCytb-For50–TTACTACTCGCCGCACATTACA-30226ClCytb-Rev50–TGAAGGGTGAAGAATCGTGTTA-30227Pig SsD-For50-TACTTCAGGACCATCTCACC-30208SsD-Rev50-TATTCAGATTGTGGGCGTAT-3020Table2Optimized PCR thermal profile of various primers of species-specific DNA markers. of DNA marker Species Denaturation temperatureand duration Annealing temperatureand durationExtension temperature anddurationNumberof cycles1GgD marker Chicken Initial denaturation of95°Cfor5min and95°C for30s 54°C for30s72°C for30s andfinalextension of72°C for5min302ApD marker Duck Initial denaturation of94°Cfor5min and94°C for45s 54°C for45s72°C for45s andfinalextension of72°C for7min303ClCytb marker Pigeon Initial denaturation of94°Cfor5min and94°C for30s 51°C for30s72°C for45s andfinalextension of72°C for5min304SsD marker Pig Initial denaturation of94°Cfor3min and94°C for30s 54°C for30s72°C for30s andfinalextension of72°C for3min30S.Haunshi et al./Meat Science83(2009)454–459455annealing and extension temperatures and their durations and number PCR cycles for each new pair of primers designed to amplify species-specific DNA markers for chicken,ducks,pigeon and pig were standardized initially.PCR reactions were carried out in a volume of25l l reaction mixture consisting of12.5l l Qiagen PCR master mix,50ng of genomic DNA,1.0l M of each for-ward and reverse primer.Optimized thermal profile of PCR assays were given in Table2.PCR reactions were carried out in program-mable Thermal Cycler(Applied Biosystems,Foster city,USA).After amplification PCR products were analyzed on1.75%agarose gel in 1X TAE buffer and bands were visualized under UV light after ethi-dium bromide staining(Sambrook&Russell,2001).The size of the PCR products was determined with the help of Kodak1D software.The PCR products from each species were purified using sample exonuclease shrimp alkaline phosphatase digestion method.Direct sequencing of purified PCR products was carried out using Big Dye terminator V3.1(ABI)chemistry in ABI prism3100genetic ana-lyzer to ascertain the specificity of primers.Sequencing of PCR products was carried out at Labindia Sequencing Facility,Gurgaon (India).3.ResultsThe species-specific primers designed for chicken,duck,and pigeon were initially subjected to basic local alignment search tool (/Blast.cgi)for sequence alignment in other species of poultry and livestock.It was observed that these primers were unique to the species of interest in our study.Spe-cies-specific marker sequences of mitochondria were initially tested with total DNA extracted from blood samples of each spe-cies and they successfully amplified unique fragments for chicken, duck,pigeon and pig.The size of species-specific markers was 256bp for chicken,292bp for ducks,401bp for pigeon and 835bp for pig(Fig.1).These markers were subsequently tested in different varieties such as Miri,Mizo-local and White Leghorn chicken,Khaki Campbell and Indian Runner breeds of ducks,domestic pigeons (Columba livia)and Khasi-local and Hampshire breeds of pig.The results were consistent across different varieties or breeds of each species.Meat species identification of chicken,duck,pigeon,and pig was further validated by checking them for cross amplification in other species such as cattle,sheep,goat,pig,rabbit,chicken,duck, pigeon and turkeys.It can be seen from Fig.2that the chicken pri-mer set(GgD-For/GgD-Rev)amplified successfully the256bp DNA fragment from chicken meat,where as no amplification products were obtained with DNA from cattle,sheep,goat,pig,rabbit,duck, pigeon and turkey meat samples.Similarly,DNA samples from duck meat successfully amplified with duck primer set(ApD-For/ ApD-Rev),generating a specific PCR product of292bp unique to this species(Fig.3).Likewise,pigeon primers(ClCytb-For/ClCytb-Rev)amplified a unique401bp product from pigeon meat while not amplifying any DNA fragment from other meat species (Fig.4).Finally,as expected the(SsD-For/SsD-Rev)primer pair amplified a fragment of835bp from pork samples without show-ing any amplification with the DNA from rest of the meat species analyzed(Fig.5).It was observed that all the four markers were highly specific for the species to which they weredesigned.Fig.1.PCR amplification of chicken,duck,pigeon(cytochrome b)and pig specificD-loop region of mitochondrial DNA nes M are molecular size marker(100bp ladder),lane1is chicken,lane2is duck,lane3is pigeon and lane4is a pigspecificmarker.Fig. 2.PCR amplification of species-specific marker from chicken and crosschecking with other meat nes M are MS marker,lane1is cattle,lane2is sheep,lane3is goat,lane4is pig,lane5is rabbit,lane6is chicken,lane7is duck,lane8is turkey and lane9is pigeon and lane B isblank.Fig.3.PCR amplification of species-specific marker from duck and cross checkingwith other meat nes M are MS marker,lane1is cattle,lane2is sheep,lane3is goat,lane4is pig,lane5is rabbit,lane6is duck,lane7is chicken,lane8isturkey and lane9is pigeon and lane B isblank.Fig.4.PCR amplification of species-specific marker from pigeon and cross checkingwith other meat nes M are MS marker,lane1is cattle,lane2is sheep,lane3is goat,lane4is pig,lane5is rabbit,lane6is pigeon,lane7is chicken,lane8is duck,lane9is turkey and lane B is blank.456S.Haunshi et al./Meat Science83(2009)454–459The meat samples of chicken,duck,pigeon and pig were ob-tained randomly and heat treated at 80°C with a holding period of 30min or autoclaved.All markers could be successfully ampli-fied from the fresh,heated (80°C)and autoclaved meat samples (Figs.6–8)except for the pig specific marker,which could not be amplified from the autoclaved meat samples (Fig.9).Thespecies-specific PCR products from chicken,duck,pigeon and pig,were sequenced to confirm the specificity of the products ampli-fied and these partial sequences were deposited in Genbank (Table 3).It was observed in the present study that for some markers such as chicken,pigeon and ducks as little as 25number of PCR cycles with denaturation,annealing and extension duration of 20s each was enough to amplify the species-specific markers (figures not shown).4.DiscussionIn this study we have utilized the D-loop portion of mitochon-drial genome to design species-specific markers for chicken duck and pig and cytochrome b gene for pigeon.Since D-loop region is a hyper variable region of mitochondrial DNA and hence it is possible to select the sequences,which are specific toparticularFig. 6.PCR amplification of species-specific marker from fresh,cooked and autoclaved chicken meat nes M are MS marker,lane 1is fresh meat sample,lane 2is heated sample (80°C)with a holding period of 30min,lane 3is autoclaved sample (121°C)and lane 4isblank.Fig.7.PCR amplification of species-specific marker from fresh and cooked duck meat nes M are MS marker,lane 1is fresh meat,lane 2is heated sample (80°C)with a holding period of 30min,lane 3is autoclaved sample (121°C)and lane 4isblank.Fig.8.PCR amplification of species-specific marker from fresh,cooked and autoclaved meat of nes M are MS marker,lane 1is fresh meat sample,lane 2is heated sample (80°C)with a holding period of 30min,lane 3is autoclaved sample (121°C)and lane 4isblank.Fig.9.PCR amplification of species-specific marker from fresh and cooked pork nes M are MS marker,lane 1is fresh pork sample,lane 2is heated sample (80°C)with holding period of 30min,lane 3is autoclaved sample (120°C)and lane 4isblank.Fig.5.PCR amplification of species-specific marker from pig and cross checking with other meat nes M are MS marker,lane 1is cattle,lane 2is sheep,lane 3is goat,lane 4is rabbit,lane 5is pig,lane 6is chicken,lane 7is duck,lane 8is turkey,lane 9is pigeon and lane B is blank.S.Haunshi et al./Meat Science 83(2009)454–459457species.Besides,mitochondrial DNA is maternally inherited so nor-mally only one allele exists in an individual and thus no sequence ambiguities are to be expected from the presence of more than one allele(Unseld,Beyermann,Brandt,&Hiesel,1995).The chicken specific primers of D-loop control region of mito-chondrial genome used in our study are conserved in all four spe-cies of jungle fowls namely red,grey,Ceylon and green jungle fowls including domestic chicken,further,mitochondrial DNA of domestic chicken is originated from red jungle fowl therefore,it is possible to identify the species of domestic chicken irrespective of its genetic origin[monophyletic(red jungle fowl)or polyphy-letic(Eriksson et al.,2008)].For pigeon species,since we could notfind reliable primers to amplify the D-loop region of mitochon-dria we went with the sequence of cytochrome b gene that is spe-cific to the pigeons.We have tested these markers in several samples and the re-sults were consistent and reproducible across the different samples tested.Cooking of meat samples at80°C with a holding period of 30min did not have any adverse effects on amplification of spe-cies-specific markers from chicken,duck,pigeon and pig.Further, even autoclaving of meat samples at121°C temperature and 15psi pressure for15–20min duration did not affect the PCR amplifications of chicken,duck and pigeon specific markers(Figs. 6–8).Thisfinding is in line with the established fact that the heat stability and large copy number of mitochondrial DNA in meat tis-sue contribute to the protection and survivability of the fragments of DNA that are sufficient enough to be amplified by PCR(Girish et al.,2004).On an average800–1000mitochondria are present in an animal cell and each mitochondrion will have6–8copies of mitochondrial genome.Hence,chances of survival of copies of mitochondrial genome during extreme conditions of heating,pro-cessing and storage are very high.Further,it was proved that mito-chondrial markers were more efficient than nuclear markers(RAPD finger printing and Actin gene barcoding)in species identification and authentication purposes(Rastogi et al.,2007).Therefore,these characteristics make the D-loop region or any other genes of mito-chondrial origin ideal for identification of species origin of fresh, cooked and autoclaved meat and meat products.Other workers also suggested that mitochondrial markers are more efficient than nuclear markers for the purpose of identification and authentica-tion meat species(Hopwood,Fairbrother,Lockley,&Bardsley, 1999).Murphy et al.(2007)have developed the cloth based hybridiza-tion array system for detection of species origin of meat meals in feed grains by amplifying mitochondrial sequences and subse-quent probing with species-specific oligonucleotide capture probes embedded on polyester cloth,followed by immunoenzymatic assay of the bound PCR products.This method was sensitive and permitted precise detection of meat meals in animal feeds. However,the process offixing the probes on polyester cloth, hybridization with amplified probe and subsequent immunoenzy-matic assay of the bound PCR products is laborious,technically demanding and expensive as compared to the species-specific PCR markers.Spectroscopy methods coupled with chemometrics analysis of protein of meat offer economical,quick,and reliable methods for meat species authentication(Arvanitoyannis&Van Houwelingen-Koukaliaroglou,2003)and they have been used to authenticate the beef samples using mid infrared spectroscopy with a chemometric technique of soft independent modelling of class analogy(SIMCA) analysis(Al-Jowder et al.,1999)and meat of pig breeds using visible and near infrared spectroscopy with SIMCA chemometrics(Cozzoli-no et al.,2006).However,they cannot be used for authentication of cooked or thermal processed meat samples due to denaturation of muscle proteins in high temperature processing.The effect of heat treatment of meat on successful amplification of species-specific markers was tested through PCR assay of DNA extracted from fresh,cooked and autoclaved meat samples.Aga-rose gel electrophoresis of total DNA extracted after heat treatment of meat samples revealed typical smearing of disintegrated DNA due to thermal processing(figures not shown).On the other hand DNA of blood samples and fresh meat samples seem to be intact and was of high molecular weight.Nonetheless,our PCR results indicate successful amplification of the desired DNA segments using DNA extracted from fresh and thermal processed meat sam-ples,confirming the ability of the PCR protocol to amplify the spe-cies-specific markers of mitochondrial origin.It was seen in the present study that pig specific marker could not be amplified using the DNA extracted from autoclaved meat samples(Fig.9).It was probably due to the larger size of the mar-ker(835bp),which might have been disintegrated during auto-claving process.Thisfinding reiterated the fact that for meat speciation by species-specific PCR,lesser the size of the marker better is the chance of its amplification from autoclaved or pro-cessed meat products(Arslan,Ilhak,&Calicioglu,2006).Therefore,the DNA markers developed in this study could be useful in identifying the species origin of fresh,cooked,as well as autoclaved meat samples of the species mentioned above and the process of identification is simple,economical and quick as com-pared to any other method such as RAPD-PCR,hybridization by species-specific probes,sequencing analysis of nuclear or mito-chondrial genes,or PCR-RFLP method of species identification. The proposed PCR assay represents a rapid,straightforward,and economical method for possible detection of misrepresentations in meat and meat products in high throughput manner.AcknowledgementsAuthors would like to sincerely thank the Director of the Insti-tute for providingfinancial assistance to carry out this b-oratory facilities provided from Veterinary Parasitology and Plant Biotechnology divisions of our Institute to carry out this study is gratefully acknowledged.ReferencesAl-Jowder,O.,Defernez,M.,Kemsley,E.K.,&Wilson,R.H.(1999).Mid-infrared spectroscopy and chemometrics for the authentication of meat products.Journal of Agricultural Food Chemistry,47(8),3210–3218.Table3Details of mitochondrial D-loop sequence used in the present study.S.No.Species Common name Breed/variety Accession No.1Gallus gallus Chicken Mizo-local FM2075612Gallus gallus Chicken White Leghorn FM2075603Gallus gallus Chicken Miri FM2075624Sus scrofa Pig Hampshire FM2075595Sus scrofa Pig Khasi-local FM2075586Anas platyrhynchos Duck Indian Runner FM2094947Anas platyrhynchos Duck Khaki Campbell FM2094958Columba livia(cytochrome b gene)Domestic pigeon Meghalaya-local FM207563 458S.Haunshi et al./Meat Science83(2009)454–459Arslan,A.,Ilhak,O.I.,&Calicioglu,M.(2006).Effect of method of cooking on identification of heat processed beef using polymerase chain reaction(PCR) technique.Meat Science,72,326–330.Arvanitoyannis,I.S.,&Van Houwelingen-Koukaliaroglou,M.(2003).Implementation of chemometrics for quality control and authentication of meat and meat products.Critical Reviews in Food Science and Nutrition,43(2), 173–218.Buntjer,J.B.,Nijman,I.J.,Zijlstra,C.,&Lenstra,J.A.(1998).A satellite DNA element specific for roe deer(Capreolus capreolus).Chromosoma,107(1),1–5.Calvo,J.H.,Zaragoza,P.,&Osta,R.(2001).Random amplified polymorphic DNA fingerprints for identification of species in poultry pate.Poultry Science,80, 522–524.Chikuni,K.,Ozustume,K.,Hoishi Kawa,T.,&Kato,S.(1990).Species identification of cooked meats by DNA hybridization assay.Meat Science, 27,199–208.Cozzolino,D.,Vadell,A.,Ballesteros,F.,Galietta,G.,&Barlocco,N.(2006).Combining visible and near-infrared spectroscopy with chemometrics to trace muscles from an autochthonous breed of pig produced in Uruguay:A feasibility study.Analytical Bioanalytical Chemistry,385,931–936.Eriksson,J.,Larson,G.,Gunnarsson,U.,Bed’hom,B.,Tixier-Boichard,M.,Strömstedt, L.,et al.(2008).Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken.PLoS Genetics,4(2),e1000010.doi:10.1371/ journal.pgen.1000010.Forrest,A.R.R.,&Carnegie,P.R.(1994).Identification of gourmet using FINS (forensically informative nucleotide sequencing).Biotechniques,17(1),24–26. Girish,P.S.,Anjaneyulu,A.S.R.,Viswas,K.N.,Anand,M.,Rajkumar,N.,Shivakumar,B.M.,et al.(2004).Sequence analysis of mitochondrial12S rRNA gene canidentify meat species.Meat Science,66,551–556.Girish,P.S.,Anjaneyulu,A.S.R.,Viswas,K.N.,Shivakumar,B.M.,Anand,M.,Patel, M.,et al.(2005).Meat species identification by polymerase chain reaction–restriction fragment length polymorphism of mitochondrial12S rRNA gene.Meat Science,70,107–112.Girish,P.S.,Anjeneyulu,A.S.R.,Viswas,K.N.,Santosh,F.H.,Bhilegaonkar,K.N., Agarwal,R.K.,et al.(2007).Polymerase chain reaction–restriction fragment length polymorphism of mitochondrial12S r RNA gene:A simple method for identification of poultry meat species.Veterinary Research Communications, 31(4),447–455.Hopwood,A.J.,Fairbrother,K.S.,Lockley,A.K.,&Bardsley,R.G.(1999).An actin gene-related polymerase chain reaction test for identification of chicken in meat mixtures.Meat Science,53,227–231.Ilhak,O.I.,&Arslan,A.(2007).Identification of meat species by polymerase chain reaction(PCR)technique.Turkish Journal of Veterinary and Animal Science,31, 159–163.Koh,M.C.,Lim,C.H.,Chua,S.B.,Chew,S.T.,&Phang,S.T.W.(1998).Random amplified polymorphic DNA(RAPD)fingerprints for identification of red meat animal species.Meat Science,48,275–285.Lee,J.C.,&Chang,J.G.(1994).Random amplified polymorphic DNA polymerase chain reaction(RAPD-PCR)fingerprints in forensic species identification.Forensic Science International,67,103–107.Mane,B.G.,Mendiratta,S.K.,Tiwari,A.K.,Bhilegaokar,K.N.,Ravindra,P.V.,&Raut,A.A.(2007).Precise and rapid identification of ovine–caprine origin of meat byspecific PCR assay.Journal of Veterinary Public Health,5(2),107–110.Meyer,R.,Hofelein,C.,Luthy,J.,&Candrian,U.(1995).Polymerase chain reaction restriction fragment length polymorphism analysis:A simple method for species identification in food.Journal of Association of Official Analytical Chemistry,78,1542–1551.Murphy,J.,Armour,J.,&Blais, B.W.(2007).Research note:Cloth-based hybridization array system for expanded identification of the animal species origin of derived materials in feeds.Journal of Food Protection,70(12), 2900–2905.Prakash,S.,Patole,M.S.,Ghumatkar,S.V.,Nandode,S.K.,&Yogesh,S.S.(2000).Mitochondrial12S rRNA sequence analysis in wild life forensics.Current Science, 8,1239–1241.Rastogi,G.R.,Dharne,M.S.,Walujkar,S.,Kumar,A.,Patole,M.S.,&Shouche,Y.S.(2007).Species identification and authentication of tissues of animal origin using mitochondrial and nuclear markers.Meat Science,76(4),666–674. Sambrook,J.,&Russell,D.W.(2001).Molecular cloning–A laboratory manual(3rd ed.).New York:Cold Spring Harbour Laboratory Press.Unseld,M.,Beyermann,B.,Brandt,P.,&Hiesel,R.(1995).Identification of the species origin of highly processed meat products by mitochondrial DNA sequences.PCR Methods and Applications,4,241–243.Verkaar,E.L.C.,Nijman,I.J.,Boutaga,K.,&Lenstra,J.A.(2002).Differentiation of cattle species in beef by PCR-RFLP of mitochondrial and satellite DNA.Meat Science,60(4),365–369.S.Haunshi et al./Meat Science83(2009)454–459459。