TAG-mapping PM resistance gene
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ORIGINALPAPERIdentificationandcomparativemappingofapowderymildewresistancegenederivedfromwildemmer(Triticumturgidumvar.dicoccoides)onchromosome2BS
ZijiLiu•JieZhu•YuCui•YongLiang•
HaibinWu•WeiSong•QingLiu•TsominYang•
QixinSun•ZhiyongLiu
Received:21June2011/Accepted:4December2011ÓSpringer-Verlag2011
AbstractPowderymildew,causedbyBlumeriagraminisf.sp.tritici,isanimportantfoliardiseaseofwheatworld-wide.Wildemmer(Triticumturgidumvar.dicoccoides)isavaluablegeneticresourceforimprovingdiseaseresistanceincommonwheat.Apowderymildewresistancegenecon-ferringresistancetoB.graminisf.sp.triticiisolateE09attheseedlingandadultstageswasidentifiedinwildemmeraccessionIW170introducedfromIsrael.Anincompletedominantgene,temporarilydesignatedMlIW170,wasresponsiblefortheresistance.ThroughmolecularmarkerandbulkedsegregantanalysesofanF2populationandF3familiesderivedfromacrossbetweensusceptibledurumwheatline81086AandIW170,MlIW170waslocatedinthedistalchromosomebin2BS3-0.84-1.00andflankedbySSRmarkersXcfd238andXwmc243.MlIW170co-segregatedwithXcau516,anSTSmarkerdevelopedfromRFLPmarkerXwg516thatco-segregatedwithpowderymildewresistancegenePm26on2BS.FourEST–STSmarkers,BE498358,BF201235,BQ160080,andBF146221,wereintegratedintothegeneticlinkagemapofMlIW170.ThreeAFLPmarkers,XPaacMcac,XPagcMcta,XPaacMcag,andsevenAFLP-derivedSCARmarkers,XcauG2,XcauG3,XcauG6,XcauG8,XcauG10,XcauG20,andXcauG25,werelinkedtoMlIW170.XcauG3,aresistancegeneanalog(RGA)-likesequence,co-segregatedwithMlIW170.Thenon-glau-cousnesslocusIw1was18.77cMdistaltoMlIW170.Bycomparativegenomicsofwheat–Brachypodium–ricegenomicco-linearity,fourEST–STSmarkers,CJ658408,CJ945509,BQ169830,CJ945085,andoneSTSmarkerXP2430,weredevelopedandMlIW170wasmappedinan2.69cMintervalthatisco-linearwitha131kbgenomicregioninBrachypodiumanda105kbgenomicregioninrice.FourRGA-likesequencesannotatedintheorthologousBrachypodiumgenomicregioncouldserveaschromosomelandingtargetregionsformap-basedcloningofMlIW170.
IntroductionIncoolandhumidareasallovertheworld,powderymil-dew,causedbyBlumeriagraminisf.sp.tritici(Bgt),isaseriousfungaldiseaseofwheataffectinggrainyieldandend-usequality.Inrecentyears,certainagronomicprac-tices,suchaspopularizationofsemi-dwarfcultivars,improvementofirrigationconditions,andincreasinguseofnitrogenousfertilizershaveincreasedcropyield,buthavealsohadtheparadoxicalsideeffectofaggravatingpowdery
CommunicatedbyP.Langridge.Z.LiuandJ.Zhucontributedequallytothiswork.TheseedstockofIW170anditsderivativesareavailableuponrequesttoZhiyongLiu,ChinaAgriculturalUniversityatzhiyongliu@cau.edu.cn.
Z.LiuÁJ.ZhuÁY.CuiÁY.LiangÁH.WuÁW.SongÁQ.LiuÁT.YangÁQ.SunÁZ.Liu(&)StateKeyLaboratoryforAgrobiotechnology,BeijingKeyLaboratoryofCropGeneticImprovement,KeyLaboratoryofCropHeterosisResearchandUtilization,DepartmentofPlantGeneticsandBreeding,ChinaAgriculturalUniversity,Beijing100193,Chinae-mail:zhiyongliu@cau.edu.cn
PresentAddress:W.SongMaizeResearchCenter,BeijingAcademyofAgriculturalandForestrySciences,Beijing100097,China
PresentAddress:Q.LiuNationalAgro-TechExtensionandServiceCenter,Beijing100125,China
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TheorApplGenetDOI10.1007/s00122-011-1767-5mildew.Althoughchemicalagentsareuniversallyusedtocontrolthisdiseaseatpresent,resistantwheatcultivarsarethemosteffective,economical,andenvironmentallysafemeansofprevention.However,race-specificresistancegenestendtoloseeffectivenesswithinshortperiodduetotheselectiveincreaseofvirulentraces.Deploymentofdiversifiedresistancegeneshasbeensuggestedasaremedytothisdilemma,necessitatingasearchfornewpowderymildewresistancegenes.Todate,morethan40wheatpowderymildewresistancelocihavebeenidentified,someofthemderivedfromdiploidortetraploidwildrelativesofcommonwheat(McIntoshetal.2008).Wildemmer,Triticumturgidumvar.dicoccoides(2n=4x=28;genomeAABB),theprogenitorofcultivatedtetraploidandhexaploidwheats,isrichingeneticdiversityforresistancestopowderymildew(Mosemanetal.1984).Severalpowderymildewresistancegenes,suchasPm16(ReaderandMiller1991),Pm26(Rongetal.2000),Pm30(Liuetal.2002),MlZec1(Mohleretal.2005),MlIW72(Jietal.2007),Pm36(Blancoetal.2008),Pm41(Lietal.2009),Pm42(Huaetal.2009),PmG16(Ben-Davidetal.2010),andMl3D232(Zhangetal.2010)wereidentifiedinwildemmer,ortransferredtocultivatedwheatorcultivatedwheatderivatives.Molecularmarkersacceleratetheidentificationandcloningofdiseaseresistancegenesinwheat.Variousmarkers,includingrestrictionfragmentlengthpolymor-phisms(RFLPs),simplesequencerepeats(SSRs),andamplifiedfragmentlengthpolymorphisms(AFLPs),havebeenusedtomapmorethan30powderymildewresistancegenes.Currently,SSRsarethemarkersofchoiceformappinginwheat.Theyareevenlydistributedalongthechromosomesandarepowerfultoolsforgeneticmappingandmarker-assistedselectionofdiseaseresistancegenes.ThousandsofpublicallyavailablewheatSSRmarkershavebeendeveloped(Ro¨deretal.1998;Somersetal.2004;http://wheat.pw.usda.gov).AFLPtechnologyhasthecapabilityofdetectingpoly-morphismsindifferentgenomicregionssimultaneously.Itisalsohighlysensitiveandreproducible.AFLPhasbecomewidelyusedforgeneratinghigh-densitylinkagemapsformajorgenes(Bu¨schgesetal.1997;Hartletal.1999)andquantitativetraitloci(QTLs)(LiuandBai2010).SinceAFLPistime-consumingandcostly,poly-morphicAFLPfragmentscanbeconvertedintosequencetaggedsite(STS)andsequence-characterizedamplifiedregion(SCAR)markers.Expressedsequencetags(ESTs)areconservedportionsofexpressedgenesandthereforecanbeusedtoconductcomparativegenomicsanalyses.ThousandsofwheatESTshavebeenphysicallylocatedtospecificchromosomebinsbyapplyingSouthernhybridizationtoasetofChineseSpringdeletionlines(Qietal.2004).Thesephysically