Biogeochemical processes in intensive zero-effluent
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Bacterial Communities in ExtremeEnvironmentsBacterial communities in extreme environments have long been a topic of fascination for scientists and researchers. These environments, such as deep-sea hydrothermal vents, polar ice caps, and acidic hot springs, present unique challenges for life to thrive. Understanding the composition and function of bacterial communities in these extreme environments can provide valuable insights into the limits of life on Earth and the potential for life on other planets. One of the most intriguing aspects of bacterial communities in extreme environments is their ability to survive and even thrive in conditions that would be lethal to most other organisms. For example, some bacteria have been found to thrive in highly acidic environments with pH levels as low as 0, while others can survive in temperatures exceeding 100°C. These extremophiles have evolved unique adaptations that allow them to withstand such harsh conditions, such as heat-resistant enzymes and protective cell membranes. Studying bacterial communities in extreme environments also has practical implications for fields such as biotechnology and medicine. Many extremophiles produce enzymes and other molecules with unique properties that make them valuable for industrial processes and medical applications. For example, heat-resistant DNA polymerases isolated from bacteria living in hot springs are essential for the polymerase chain reaction (PCR) technique used in genetic testing and sequencing. In addition to their biotechnological potential, bacterial communities in extreme environments also play important roles in the Earth's biogeochemical cycles. For example, bacteria in deep-sea hydrothermal vents are involved in the cycling of minerals and nutrients, while those in Arctic permafrost play a crucial role in the decomposition of organic matter. Understanding how these communities function in extreme environments is essential for predicting how they may respond to environmental changes, such as climate warming or ocean acidification. Despite the many opportunities for discovery and innovation that studying bacterial communities in extreme environments presents, there are also significant challenges. Accessing these environments for sampling and experimentation can belogistically and technically challenging, requiring specialized equipment and expertise. Additionally, the low biomass and diversity of bacterial communities in some extreme environments can make studying them difficult, as traditional methods of microbial analysis may not be applicable. Furthermore, the ethical considerations of studying extremophiles must be carefully considered. While these organisms may seem alien and exotic, they are still living organisms deserving of respect and ethical treatment. Researchers must ensure that their studies do not harm or disrupt these communities, and that any potential biotechnological applications are pursued in a responsible and sustainable manner. In conclusion, the study of bacterial communities in extreme environments is a fascinating and important area of research with wide-ranging implications. From understanding the limits of life on Earth to discovering new biotechnological applications, the insights gained from studying extremophiles have the potential to shape our understanding of biology and the world around us. However, this research also presents challenges and ethical considerations that must be carefully navigated. As we continue to explore and learn from these extreme environments, it is essential that we do so with a sense of wonder and respect for the incredible diversity of life on our planet.。
Microbial communities in extremeenvironmentsMicrobial communities in extreme environments have long been a subject of fascination and intrigue for scientists and researchers. These environments, such as deep-sea hydrothermal vents, high-altitude mountain ranges, and polar ice caps, present unique challenges for life to thrive. Despite the harsh conditions, microbial communities have not only managed to survive but have also thrived in these extreme environments. The study of these microbial communities has provided valuable insights into the adaptability and resilience of life on Earth. One of the most striking aspects of microbial communities in extreme environments istheir ability to withstand extreme conditions. For example, in the deep-sea hydrothermal vents, where temperatures can reach up to 400°C and the pressure is immense, microbial communities have adapted to thrive in these conditions. This ability to survive in such extreme environments has captured the attention of scientists, who are keen to understand the mechanisms that allow these microorganisms to not only survive but also to carry out essential biological processes in such harsh conditions. Furthermore, the study of microbial communities in extreme environments has significant implications for astrobiology and the search for extraterrestrial life. The ability of microbial communities to thrive in extreme environments on Earth has led scientists to speculate about the potential for life to exist in similarly extreme conditions on other planets or moons in our solar system. By studying the adaptations and survival strategies of these microbial communities, scientists hope to gain insights that could inform the search for life beyond Earth. In addition to their scientific significance, microbial communities in extreme environments also hold potential for biotechnological applications. The unique biochemical pathways and metabolic processes employed by these microorganisms to survive in extreme conditions could be harnessed for various industrial and environmental applications. For example, extremophiles, microorganisms that thrive in extreme environments, have been studied for their potential in bioremediation of contaminated sites and in the production of novel enzymes and bioactive compounds. From an environmentalperspective, the study of microbial communities in extreme environments also provides valuable insights into the interconnectedness of life on Earth. These microorganisms play crucial roles in biogeochemical cycles and energy flow in these extreme environments, contributing to the overall functioning of Earth's ecosystems. Understanding the dynamics of these microbial communities is essential for predicting the responses of these ecosystems to environmental changes and disturbances. Finally, the study of microbial communities in extreme environments also raises ethical considerations regarding the impact of human activities on these fragile ecosystems. As technological advancements enable humans to access and exploit extreme environments, there is a growing concern about the potential disruption of these microbial communities. It is crucial for scientists, policymakers, and the public to consider the potential consequences of human activities on these ecosystems and to develop strategies for their conservation and sustainable management. In conclusion, the study of microbial communities in extreme environments offers a wealth of scientific, technological, and ethical implications. These microorganisms have demonstrated remarkable adaptability and resilience, providing valuable insights into the potential for life to exist in extreme conditions and the interconnectedness of life on Earth. As research inthis field continues to advance, it is essential to consider the broader implications and responsibilities associated with the study and conservation of these unique ecosystems.。
Microbial processes in the hydrogencycleMicrobial processes play a crucial role in the hydrogen cycle, contributing to the production and consumption of hydrogen in various environments. Understanding these processes is essential for harnessing the potential of hydrogen as a renewable energy source and for comprehending the intricate interactions within microbial communities. In this response, I will delve into the microbial processes involved in the hydrogen cycle, highlighting their significance and exploring the implications for environmental sustainability and energy production. One of the key microbial processes in the hydrogen cycle is hydrogen production by certain species of bacteria through a metabolic pathway known as fermentation. These bacteria, known as hydrogen producers or fermenters, utilize organic compounds as substrates to produce hydrogen gas as a byproduct. This process, known as dark fermentation, occurs in anaerobic conditions and is a promising avenue for biohydrogen production. The ability of these bacteria to efficiently convert organic waste into hydrogen presents an exciting opportunity for sustainable energy production while simultaneously addressing waste management challenges. Conversely, hydrogen consumption by microorganisms also plays a pivotal role in the hydrogen cycle. Hydrogenotrophic microorganisms, such as certain archaea and bacteria, are capable of utilizing molecular hydrogen as an electron donor for energy generation. This process, known as hydrogenotrophy, is a form of chemosynthesis and is particularly significant in extreme environments such as deep-sea hydrothermal vents and subsurface ecosystems. By tapping into the energy potential of hydrogen, these microorganisms contribute to the overall cycling of hydrogen in diverse ecosystems and underscore the adaptability of microbial life. Moreover, the interactions between hydrogen-producing and hydrogen-consuming microorganisms shape the dynamics of microbial communities and influence biogeochemical cycles. For instance, in the anaerobic environment of the rumen, a part of the digestive system of ruminant animals, hydrogen-producing bacteria collaborate with methanogenic archaea in a symbiotic relationship. The hydrogen produced during the fermentation of feed by bacteria serves as a substrate formethanogens, which convert it into methane. This mutualistic interaction not only affects the efficiency of feed digestion in ruminants but also has implicationsfor greenhouse gas emissions due to the release of methane, a potent greenhouse gas. Furthermore, the role of microbial processes in the hydrogen cycle extends beyond natural ecosystems to engineered systems such as microbial electrolysis cells (MECs) and anaerobic digesters. MECs harness the ability of exoelectrogenic bacteria to oxidize organic matter and transfer the resulting electrons to an electrode, leading to the production of hydrogen gas. This technology holds promise for sustainable hydrogen production and wastewater treatment, highlighting the potential for integrating microbial processes into innovative solutions for environmental challenges. In conclusion, microbial processes are integral to the hydrogen cycle, encompassing a diverse array of metabolic pathways andinteractions that shape ecosystems and hold promise for sustainable energy production. By unraveling the complexities of microbial hydrogen metabolism, we can gain insights into the potential for harnessing hydrogen as a renewable energy source and the intricate web of interactions within microbial communities. Embracing a multidisciplinary approach that integrates microbiology, biogeochemistry, and bioengineering is essential for unlocking the full potential of microbial processes in the hydrogen cycle and advancing towards a more sustainable future.。
Bacterial Communities in Bioreactors Bacterial communities in bioreactors play a crucial role in various industrial and environmental processes. These complex microbial communities are responsible for the degradation of organic matter, the production of valuable compounds, and the treatment of wastewater. Understanding the dynamics of these bacterial communities is essential for optimizing bioreactor performance and developing sustainable biotechnological processes. One of the key challenges in studying bacterial communities in bioreactors is the complexity and diversity of the microbial populations. These communities often consist of hundreds or even thousands of different bacterial species, each with its own unique metabolic capabilities and interactions. The composition and structure of these communities can be influenced by a wide range of factors, including the type of bioreactor, the nature of the substrate, and the operating conditions. As a result, characterizing and monitoring these communities requires sophisticated analytical techniques and a deep understanding of microbial ecology. In recent years, advances in high-throughput DNA sequencing technologies have revolutionized our ability to study bacterial communities in bioreactors. Metagenomic and metatranscriptomic approaches allow researchers to analyze the entire microbial community, providing insights into the genetic potential and functional activities of the bacteria present. These techniques have revealed the incredible diversity and metabolic versatility of microbial communities in bioreactors, shedding light on their role in biogeochemical cycling and biotechnological processes. Despite these advances, studying bacterial communities in bioreactors remains a challenging and dynamic field of research. The complex interactions between different bacterial species, as well as between bacteria and their environment, pose significant obstacles to our understanding. Moreover, the inherentvariability and adaptability of microbial communities mean that their behavior can be difficult to predict and control. This unpredictability is both a source of frustration and a testament to the remarkable resilience and adaptability of these microbial ecosystems. From an industrial perspective, the study of bacterial communities in bioreactors is of paramount importance for the development of biotechnological processes. By understanding how microbial communities respond todifferent operating conditions and substrates, it is possible to optimize bioreactor performance and maximize the production of desired compounds. This knowledge is particularly valuable in the fields of bioenergy production, bioremediation, and wastewater treatment, where the efficiency and stability of bioreactor operations are critical. On a broader scale, the study of bacterial communities in bioreactors has significant implications for environmental sustainability. By harnessing the metabolic activities of microbial communities, it is possible to develop eco-friendly solutions for waste treatment and resource recovery. Moreover, understanding the ecological principles that govern microbial communities in bioreactors can provide valuable insights into natural ecosystems and the global biogeochemical cycles that sustain life on Earth. In conclusion, the study of bacterial communities in bioreactors is a multifaceted and dynamic field of research with far-reaching implications. From a scientific perspective, it presents both technical challenges and opportunities for discovery, driving innovation in microbial ecology and biotechnology. From an industrial and environmental perspective, it holds the key to developing sustainable processes for resource recovery and waste treatment. As our understanding of microbial communities continues to deepen, so too will our ability to harness their potential for the benefit of society and the planet.。
生物分离工程的英语Biological Separation Engineering is a specialized field that focuses on the isolation and purification of biological products. It plays a crucial role in the pharmaceutical, food, and biotechnology industries, where the extraction ofbioactive compounds from natural sources is essential.The process typically begins with the selection of an appropriate feedstock, which could be anything from plant material to microorganisms. Once the feedstock is identified, it undergoes a series of steps to separate the desired components. These steps may include:1. Pre-treatment: This involves breaking down the complex structure of the feedstock to release the target molecules. Techniques such as mechanical disruption, enzymatic digestion, or chemical treatment may be used.2. Extraction: The target molecules are then extractedfrom the pre-treated material. This can be done using solvent extraction, where a solvent is used to dissolve the desired compounds, or by using methods like supercritical fluid extraction, which employs high-pressure gases to extract the compounds.3. Concentration: After extraction, the solution is often diluted and needs to be concentrated to increase the concentration of the target molecules. This can be achievedthrough evaporation, membrane filtration, or centrifugation.4. Purification: The concentrated solution may still contain impurities, so further purification is necessary. Chromatography is a common technique used at this stage, which separates molecules based on their affinity to the stationary phase.5. Polishing: The final step is to polish the purified product to ensure it meets the required specifications. This may involve additional rounds of purification or the use of specific techniques to remove any remaining impurities.Biological separation engineering is a complex process that requires a deep understanding of both the properties of the target molecules and the various separation techniques available. Advances in this field are continually improving the efficiency and selectivity of these processes, making it possible to produce high-quality biological products for a wide range of applications.。
相分离所需的蛋白浓度 critical phaseseparation concentrationThe critical phase separation concentration is the protein concentration at which proteins undergo phase separationand form liquid droplets or aggregates. This phenomenon, known as phase separation or liquid-liquid demixing, playsa crucial role in various biological processes such as the formation of membrane-less organelles and cellular signal transduction.相分离所需的蛋白浓度(critical phase separation concentration)是指蛋白质在此浓度下发生相分离,并形成液滴或聚集体的浓度。
这种现象被称为相分离或液-液分离,它在多种生物过程中起着关键作用,例如膜无细胞器的形成和细胞信号转导。
Phase separation is a thermodynamically driven process that occurs when proteins can no longer remain solubilized in a homogeneous solution. Instead, they undergo demixing due to changes in environmental conditions such as temperature, pH, or ionic strength. The critical phase separation concentration represents the threshold at which proteinsstart to segregate into distinct phases.相分离是一种热力学驱动的过程,当蛋白质不能再保持在均匀溶液中溶解时就会发生。
各i湖泊碳酸盐氧化钙含量对比英文回答:The comparison of the calcium carbonate content in various lakes is essential for understanding the carbon cycling and biogeochemical processes in these aquatic ecosystems. Here, we will compare the calcium carbonate content in three different lakes: Lake A, Lake B, and Lake C.Lake A: The calcium carbonate content in Lake A was found to be 20 mg/L. This indicates a moderate level of calcium carbonate in the water, which can contribute to the buffering capacity of the lake and influence the pH levels.Lake B: In Lake B, the calcium carbonate content was measured at 15 mg/L. This suggests a slightly lower concentration of calcium carbonate compared to Lake A. The lower calcium carbonate content may have implications for the lake's ability to neutralize acidity and supportaquatic life.Lake C: The calcium carbonate content in Lake C was determined to be 25 mg/L. This indicates a relatively higher concentration of calcium carbonate compared to the other two lakes. The elevated calcium carbonate levels can have an impact on the overall water quality and the ecological dynamics of the lake.In summary, the comparison of calcium carbonate content reveals variations in the biogeochemical characteristics of these lakes. Understanding these differences is crucial for assessing the potential effects on aquatic organisms and ecosystem functioning.中文回答:对比各湖泊中碳酸盐含量的差异对于了解这些水生态系统中的碳循环和生物地球化学过程至关重要。
岩溶区河流水化学昼夜变化与生物地球化学过程章程【摘要】河流水化学昼夜动态变化的研究有助于揭示水体中相对快速的生物地球化学过程(河流内过程),同时也有助于判别上游补给区流域过程。
已有的研究表明生物过程(光合作用与呼吸作用)、地球化学过程(碳酸盐平衡、碳酸钙沉积)是控制河流 pH、SpC、Ca2+和 HCO -3含量昼夜变化的主要因素。
不同级别、类型及河床微环境均会对水化学昼夜变化产生影响,与气温密切相关的光合作用是产生河水 pH 值和 DO 昼夜变化的主控因素。
在偏碱性与富含钙离子的岩溶河流,有机体的钙化作用与酸分泌可能对光合作用具有重要作用,从而导致水体中 Ca2+和HCO -3出现白天下降-夜间回升的昼夜动态变化,下降幅度达20%~30%。
水生植物通过光合作用产生DIC(主要为HCO -3)的原位沉降,是真正意义上的净碳汇。
昼夜生物地球化学循环及效应研究有助于全面认识岩溶区碳循环特征及岩溶含水层源汇关系,尤其是岩溶碳汇稳定性与净碳汇估算;同时对长时间尺度河流监测计划的制定具有重要意义。
%Study on diel cycling of stream hydrochemistry can help to reveal relatively rapid biogeochemical processes in natural water (processes of in stream flows)and discriminate drainage basin processes in re-charge areas.Existing research shows that biologicalprocesses(photosynthesis and respiration),geochemicalprocesses(bicarbonate equilibrium,and calcite precipitation)are the main controlling factors on diel varia-tions of pH values,specificconductivity(SpC),concentrations of Ca2 + and HCO -3 instreams.Furthermore, stream orders and types and even microenvironments of the riverbed all have remarkable influence on diel a-queous chemistry.The pH value and dissolved oxygen(DO)are mainly controlled by photosynthesis which is closely related to air temperature.In high-alkalinity and calcium-rich streams,representing carbonate-rich basins,calcification and acid secretion of organisms may play an important role in aquatic plant photosynthe-sis,thus resulting in diel hydrochemical cycling with daytime decrease(up to a 20% to 30% decline)and nighttime increase of concentrations of Ca2 + and HCO -3 .Diel DIC cycling downstream caused by photosyn-thesis and its changes along the stream flow indicate that the stream is losing inorganic carbon along its flow path.It converts to organic carbon,such that inorganic C storage in streambeds will be an important net DIC sink in small productive streams.The effect of diel cycling of biogeochemistry on interpretation of carbon cy-cling,sink and source,especially on clarification of karst carbon sink stability and net carbon sink estimation trends becomes increasingly important in karst aquifer systems.Diel variability has implications for the de-sign of long-term surface water monitoring programs and interpretation of water quality trends.【期刊名称】《中国岩溶》【年(卷),期】2015(000)001【总页数】8页(P1-8)【关键词】河流;水化学昼夜变化;生物地球化学过程;岩溶;碳汇效应【作者】章程【作者单位】中国地质科学院岩溶地质研究所/联合国教科文组织国际岩溶研究中心,国土资源部、广西壮族自治区岩溶动力学重点实验室,广西桂林 541004【正文语种】中文【中图分类】P642.25作为地球关键带的三大过程之一[1],生物地球化学过程将生物过程与非生物过程联系在一起,它与水文过程相互耦合,推动了生态过程的持续进行,又共同决定了关键带的整体形态与功能[2],在全球变化与岩溶碳循环研究领域,了解生物地球化学过程、影响因素与机制,对解决岩溶作用时间尺度与碳汇稳定性问题具有至关重要的作用[3]。
《基因工程》习题及参考答案一、习题:1. What are biotechnology and genetic engineering?2. What is a gene?3. What are genetically engineered medicines?4. What do genome research and human genetics deal with?5. What potentials are held out by genetic diagnosis?6. What options are given by gene therapy?7. What is an embryo - and what is a fetus?8 What is a genetic fingerprint?9 What does the term "therapeutic cloning" mean?10 What are stem cells?11 What is a transgenic organism?12 What does xenotransplantation mean?13 How will genetic engineering be used in agriculture?14 How are genetically modified organisms assessed?15 What does the German Embryo Protection Act regulate?16. What is a genome?17. Is there a risk of bioterrorism?18. How does genetic engineering affect the environment?19. Are genetically engineered crops good for farmers?20.What is the difference between restriction digestion and restriction mapping?21.Can you combine two different restriction enzymes in the same reaction tubes todigest the DNA molecules?22.Why should we need to generate restriction mapping data?23.How many restriction enzymes available now on the market?24.Why do you consider mutagenesis in vitro as one of the most critical techniquesfor us to understand in genetic engineering class?25.How do we choose the methods for DNA modification?26.How do we choose a gene expression system?27.How can we express eukaryotic gene in E.coli?28.What should we consider before we start the recombinant protein expressionexperiment?29.What is the advantage of yeast expression system?30.What is the advantage of insect expression system?31.Why there are so many different types of vectors available for cloning?32.What is the difference between cloning vector and expression vector?33.What is a genetic fingerprint?34. 基因具体分成多少种类?35. 什么叫印记基因?36.什么叫遗传漂变?37.人类基因组图谱和初步分析结果是在哪一年公布的?38.人类基因组共有多少基因?39. 克隆羊成功的技术关键是什么?40. 有人计划将两个不同物种的动植物体细胞进行融合,然后将融合体的核移植到其中一种生物的未受精卵细胞中,进行体细胞克隆。
疏水性螯合物固相萃取-原子吸收光谱法测定海水中5种重金属王增焕;王许诺;谷阳光;陈瑛娜【摘要】海水重金属的含量变化与分布特征受海洋中生物地球化学过程控制.海水重金属测定的难点在于海水盐度高且重金属含量低,需要进行分离、富集等样品前处理.常规前处理方法如溶剂萃取样品量大、操作繁琐,使用大量有机溶剂,对环境和操作者危害大;共沉淀法容易造成污染.本研究以吡咯烷基二硫代甲酸铵和二乙氨基二硫代甲酸钠为螯合剂,采用商品化的固相萃取柱,分离海水中的镉、铜、铅、镍和锌5种重金属,原子吸收光谱法测定其含量.结果表明:5种元素工作曲线的相关性较好(R>0.999),镉锌的线性范围分别为0~4 μg/L和0~100 μg/L,铅铜镍的线性范围为0~40 μg/L;检出限(μg/L)分别为0.02、2.6、0.06、0.18、0.3,方法精密度高(RSD<5%),加标回收率为93.8%~104%.本方法利用疏水性作用的固相萃取技术,实现了海水分析的绿色样品前处理.%The concentration and distribution of heavy metals in seawater are controlled by biogeochemical processes in the ocean.It is difficult to analyze accurately the concentrations of heavy metals in seawater due to the high salinity of seawater and low concentrations of heavy metals.Separation and preconcentration processes are needed.Conventional pretreatment methods include solvent extraction and coprecipitation.During solvent extraction, large volumes of seawater samples and organic solvents are used, complicating the procedure and endangering the environment and operator.The coprecipitation method can readily cause contamination of the analytes.In this study, the concentrations of 5 heavy metals, Cd, Cu, Ni, Pb and Zn in seawater weredetermined by Atomic Absorption Spectrometry after solid phase extraction of hydrophobic chelate with ammonium pyrrolidine dithiocarbamate and sodium diethyldithiocarbmate as chelatingagents.The results show that there is a good correlation (R>0.999) between the absorbance and concentration of Cd, Cu, Ni, Pb and Zn.The linear ranges of the working curve for Cd and Zn were 0-40 μg/L and 0-100μg/L, respectively, whereas the linear ranges for Pb, Cu, and Ni were 0-40μg/L.The detection limits (μg/L) of Cd, Zn, Pb, Cu and Ni were 0.02, 2.6,0.06, 0.18 and 0.3, respectively.The precision and recovery were less than 5% and 93.8%-104%, respectively.This method utilizes the hydrophobic interaction of solid phase extraction technology to realize the green sample pretreatment of seawater analysis.【期刊名称】《岩矿测试》【年(卷),期】2017(036)004【总页数】7页(P360-366)【关键词】海水;重金属;固相萃取;绿色分离技术;二硫代氨基甲酸盐;原子吸收光谱法【作者】王增焕;王许诺;谷阳光;陈瑛娜【作者单位】中国水产科学研究院南海水产研究所,农业部水产品加工重点实验室,广东省渔业生态环境重点实验室,广东广州 510300;中国水产科学研究院南海水产研究所,农业部水产品加工重点实验室,广东省渔业生态环境重点实验室,广东广州510300;中国水产科学研究院南海水产研究所,农业部水产品加工重点实验室,广东省渔业生态环境重点实验室,广东广州 510300;中国水产科学研究院南海水产研究所,农业部水产品加工重点实验室,广东省渔业生态环境重点实验室,广东广州510300【正文语种】中文【中图分类】P641;O657.31海水中重金属元素主要来源于大气沉降、地表径流输入、海底热液活动释放等,参与海洋中各种物理、化学和生物过程[1],与海水中的水合氧化物胶体、颗粒物、有机物等配位体络合[2],其含量变化、分布特征、物理和化学形态,是海洋地球化学研究的重要内容[3-4]。
Microbial Ecology of AquaticEnvironmentsMicrobial ecology in aquatic environments is a fascinating and complex field of study that delves into the interactions between microorganisms and their surrounding habitat. These microscopic organisms play a crucial role in maintaining the health and balance of aquatic ecosystems, influencing nutrient cycling, water quality, and overall ecosystem stability. From the depths of the ocean to the smallest freshwater pond, microbial communities are diverse and dynamic, adapting to changing environmental conditions and forming intricate networks of interactions. One of the key aspects of microbial ecology in aquatic environments is understanding the diversity of microbial communities and how they are structured. Microorganisms in aquatic ecosystems can vary greatly in terms of species composition, abundance, and functional roles. From bacteria and archaea to fungi and protists, these microorganisms form complex food webs and play essential roles in nutrient cycling and energy flow. Studying the factors that influence microbial community composition, such as water temperature, pH, nutrient availability, and predation, can provide valuable insights into the functioning of aquatic ecosystems. In addition to studying microbial diversity, researchers in the field of microbial ecology also investigate the functional roles of microorganisms in aquatic environments. Microbes are involved in various biogeochemical processes, such as carbon and nitrogen cycling, sulfur metabolism, and metal detoxification. For example, certain bacteria are capable of converting organic matter into inorganic nutrients through processes like decomposition and mineralization, which are essential for the growth of plants and other organisms in the ecosystem. Understanding the functional roles of microbes can help us predict how changes in microbial communities may impact ecosystem processes and services. Furthermore, microbial ecology in aquatic environments also sheds light on the interactions between microorganisms and higher organisms, such as plants, animals, and humans. Microbes can form symbiotic relationships with other organisms, providing essential services like nutrient uptake, pathogen protection, and waste degradation. For example, certain bacteria living in the roots ofaquatic plants can fix nitrogen from the atmosphere, making it available for plant growth. On the other hand, some pathogenic microorganisms can pose a threat to human health through contaminated water sources, causing diseases like cholera and dysentery. Studying these interactions can help us better manage and protect aquatic ecosystems for the benefit of all organisms. Moreover, microbial ecology in aquatic environments is also crucial for understanding the impacts of human activities on microbial communities and ecosystem health. Pollution, habitat destruction, overfishing, and climate change can all have profound effects on aquatic microbial communities, leading to shifts in species composition, loss of biodiversity, and disruption of ecosystem functions. By studying how microbial communities respond to these stressors, researchers can develop strategies for mitigating their negative impacts and restoring the health of aquatic ecosystems. Collaboration between scientists, policymakers, and local communities is essential for implementing effective conservation and management measures that support the resilience of aquatic microbial communities. In conclusion, microbial ecology in aquatic environments is a dynamic and interdisciplinary field that explores the intricate relationships between microorganisms and their surroundings. By studying microbial diversity, functional roles, interactions, and responses to environmental changes, researchers can gain valuable insights into the functioning and resilience of aquatic ecosystems. Through collaborative efforts and innovative research approaches, we can work towards protecting and preserving these vital ecosystems for future generations.。
Microbial processes in the sulfur cycle Microbial processes play a crucial role in the sulfur cycle, which isessential for the global cycling of sulfur. Sulfur is an important element for all living organisms, and its availability is largely dependent on microbial processes. In this essay, we will explore the various microbial processes involved in the sulfur cycle and their significance. Firstly, the sulfur cycle begins with the mineralization of organic sulfur compounds by sulfate-reducing bacteria. These bacteria break down complex organic sulfur compounds into simpler forms, releasing sulfide ions into the environment. This process is important for the recycling of sulfur from decaying organic matter, making it available for other organisms to use. Next, sulfur-oxidizing bacteria play a key role in the oxidation of sulfide ions to elemental sulfur or sulfate. This process is important for the conversion of sulfide, which is often toxic to many organisms, into forms that are less harmful. Sulfur-oxidizing bacteria are also important in the formation of sulfuric acid, which contributes to the weathering of rocks and minerals. Furthermore, the process of dissimilatory sulfate reduction by bacteria is crucial in the sulfur cycle. This process involves the reduction of sulfate to sulfide, which can thenbe used by other organisms in the environment. Additionally, some bacteria are capable of using sulfur compounds as electron acceptors in anaerobic respiration, contributing to the cycling of sulfur in anoxic environments. Moreover, the process of microbial mineralization of organic matter also plays a significantrole in the sulfur cycle. Sulfate-reducing bacteria break down organic matter in anoxic environments, releasing sulfide ions and contributing to the overallcycling of sulfur. This process is important for the decomposition of organic matter and the release of sulfur back into the environment. In addition, the microbial process of sulfur disproportionation is important in the sulfur cycle. This process involves the conversion of elemental sulfur to hydrogen sulfide and sulfate, or vice versa, by certain bacteria. Sulfur disproportionation contributes to the cycling of sulfur between different oxidation states, making it availablefor various biological processes. Finally, the microbial processes involved inthe sulfur cycle have significant implications for global biogeochemical cycles. The cycling of sulfur is important for the availability of this essential elementfor all living organisms, and microbial processes play a central role in regulating the flux of sulfur in the environment. In conclusion, microbial processes are integral to the sulfur cycle, playing a crucial role in the transformation and recycling of sulfur in the environment. Understanding these processes is essential for comprehending the dynamics of sulfur cycling and its implications for ecosystems worldwide.。
As a high school student, the journey through the gaokao, Chinas national college entrance examination, is an experience that shapes our lives significantly. Among the subjects that we prepare for, biology stands out as a fascinating and complex field that challenges us to understand the intricate workings of life. Here, I want to share my reflections on the gaokao biology experience and how it has influenced my perspective on the natural world.The gaokao biology curriculum is vast, encompassing topics from cellular biology to ecology. It requires a deep understanding of the scientific method, as well as the ability to apply this knowledge to a variety of scenarios. One of the most challenging aspects of studying for the gaokao in biology is the sheer volume of information that we must absorb. From memorizing the structure of the DNA double helix to understanding the complex interactions within an ecosystem, the breadth of knowledge is immense.During my preparation for the gaokao, I found that the key to mastering biology was not just rote memorization, but also the ability to think critically about the information. For example, understanding the process of photosynthesis wasnt just about remembering the steps it was about grasping why plants need sunlight and carbon dioxide to produce glucose and oxygen. This understanding allowed me to apply the concept to various questions and scenarios, which is a common approach in the gaokao biology exam.The gaokao biology exam also tests our ability to analyze data and drawconclusions. We are often presented with graphs, charts, and experimental results that we must interpret. This skill is not only crucial for the exam but also for our future studies and careers. It has taught me the importance of being detailoriented and analytical, skills that are valuable in any field.One of the most memorable parts of my biology gaokao preparation was the dissection of a frog. This handson experience gave me a deeper appreciation for the complexity of life and the precision of biological systems. It was a humbling experience to see the intricate network of muscles, nerves, and organs that work together to keep an organism alive. This experience has instilled in me a greater respect for life and the natural world.Moreover, the gaokao biology exam has also taught me about the importance of environmental conservation. Studying topics like biodiversity, climate change, and sustainable development has made me more aware of the challenges our planet faces. It has motivated me to consider how I can contribute to a more sustainable future, whether through my career choices or my daily actions.In conclusion, the gaokao biology experience has been more than just a test of my knowledge it has been a journey of discovery and learning about the world around me. It has equipped me with a scientific mindset and a deeper understanding of the natural world. As I look forward to my future, I am grateful for the lessons I have learned and the skills I have developed through the gaokao biology curriculum. It has prepared me notonly for higher education but also for a lifetime of curiosity and exploration.。
Microbial Biofilm Sample Microbial biofilms are a common and complex issue in various industries, including healthcare, food production, and environmental management. Thesebiofilms are formed when microorganisms adhere to a surface and create aprotective extracellular matrix, making them highly resistant to antimicrobial treatments. As a result, biofilms can lead to persistent infections, contamination of food processing equipment, and biofouling of water systems. Understanding the structure and behavior of microbial biofilms is crucial for developing effective strategies to prevent and control their formation. One of the key challenges in studying microbial biofilms is their heterogeneous nature. Biofilms are composedof a diverse community of microorganisms, including bacteria, fungi, and algae, which can interact in complex ways within the biofilm matrix. This complexity makes it difficult to predict the behavior of biofilms and to develop targeted interventions. Additionally, the extracellular matrix of biofilms can act as a barrier to the penetration of antimicrobial agents, further complicating treatment strategies. Another important aspect of microbial biofilms is their impact on human health. Biofilms are commonly associated with chronic infections, such as those caused by Pseudomonas aeruginosa in cystic fibrosis patients or Staphylococcus aureus in wounds. These infections are often difficult to treat due to the resistance of biofilm-associated microorganisms to antibiotics. In addition, biofilms can form on medical devices, such as catheters and implants, increasing the risk of device-related infections. The ability of biofilms to evade the immune system and resist antimicrobial treatment poses a significant threat to public health. In the food industry, microbial biofilms can lead to contamination offood processing equipment and facilities. This can result in the spoilage of food products and the transmission of foodborne pathogens to consumers. Biofilms can also form in water distribution systems, leading to biofouling and corrosion of pipes. These issues not only impact the quality and safety of food and water but also incur significant economic costs for the affected industries. In environmental settings, microbial biofilms play a crucial role in biogeochemical processes, such as nutrient cycling and pollutant degradation. However, biofilms can also contribute to the deterioration of infrastructure, such as in the case ofbiofouling in marine environments. The presence of biofilms in water systems can also lead to the proliferation of pathogenic microorganisms, posing risks to both human and ecosystem health. In conclusion, microbial biofilms present a multifaceted problem with far-reaching implications for human health, industry, and the environment. Addressing this issue requires a comprehensive understanding of biofilm structure and behavior, as well as the development of innovative strategies for biofilm prevention and control. By addressing the challenges posed by microbial biofilms, we can improve the safety and sustainability of various systems and industries.。
DOI :10.16030/ki.issn.1000-3665.202007033地下水位波动带三氮迁移转化过程研究进展刘 鑫1,2,左 锐1,2,王金生1,2,何柱锟1,2,李 桥1,2(1. 北京师范大学水科学研究院,北京 100875;2. 地下水污染控制与修复教育部工程研究中心,北京 100875)摘要:三氮是我国地下水中典型污染物,其在包气带和含水层中的迁移转化过程受到高度关注。
近几年,地下水位波动带中的三氮迁移转化已经成为新的研究领域。
在综合运用文献计量分析法,定量分析相关研究趋势的基础上,系统总结地下水位波动带形成及特点,梳理波动带中三氮迁移转化过程及生物地球化学过程最新研究表述及成果,并对今后可能的研究热点和方向进行了展望。
现有研究表明:水位波动带中环境指标如土壤含水率、氧化还原电位、溶解氧和有机质含量均表现出一定的分带性规律,微生物菌群结构和功能基因更多样化,并呈现一定的分布特征。
随着地下水位波动,包气带中的三氮易浸溶进入地下水并发生迁移。
地下水位上升,硝化作用减弱,反硝化作用增强;地下水位下降,硝化作用增强,反硝化作用减弱。
为完善水位波动带三氮迁移转化过程研究,应进一步关注:(1)将水化学演化分析与分子生物学高通量测序方法相结合,深入探究水位波动带三氮转化与微生物作用机理;(2)除关注硝化、反硝化作用外,增加异化还原、同化还原和厌氧氨氧化等作用过程的研究;(3)细化分析更多情境、更多影响因素的水位波动过程,识别水位波动带三氮转化的关键影响要素。
关键词:地下水位波动带;三氮;迁移转化;微生物功能基因中图分类号:P642.3 文献标志码:A 文章编号:1000-3665(2021)02-0027-10Advances in researches on ammonia, nitrite and nitrate on migration and transformation in thegroundwater level fluctuation zoneLIU Xin 1,2,ZUO Rui 1,2,WANG Jinsheng 1,2,HE Zhukun 1,2,LI Qiao1,2(1. College of Water Sciences , Beijing Normal University , Beijing 100875, China ;2. Engineering Research Center of Groundwater Pollution Control and Remediation ,Ministry of Education , Beijing 100875, China )Abstract :Ammonia, nitrite and nitrate are typical pollutants in shallow groundwater and in the vadose zone, and their migration and transformation processes are highly concerned. In recent years, new studies have focused on the three-nitrogen in the groundwater level fluctuation zone. This paper comprehensively uses the literature measurement analysis method to quantitatively analyze the related research trends, and systematically summaries the latest research results of the formation and characteristics of the groundwater level fluctuation zone, the migration and transformation process of the three-nitrogen and their biogeochemical processes in the fluctuation zone. The results show that environmental indicators such as soil moisture content, redox potential, contents of dissolved oxygen and organic matter in the groundwater level fluctuation zone have remarkable zoning rules, and收稿日期:2020-07-13;修订日期:2020-09-12基金项目:国家自然科学基金资助项目(41831283;41877181);111引智计划项目(B18006)第一作者:刘鑫(1988-),女,博士研究生,主要从事地下水污染控制与修复研究。
海洋pco2动力学模型英文回答:Ocean pCO2 dynamics models are used to study the changes in the partial pressure of carbon dioxide (pCO2) in the ocean over time. These models are important for understanding the carbon cycle and its impact on climate change. There are several different types of models that can be used to simulate ocean pCO2 dynamics, including box models, one-dimensional models, and three-dimensional models.Box models are the simplest type of ocean pCO2 dynamics model. They divide the ocean into different boxes or compartments and simulate the exchange of carbon dioxide between these boxes. For example, a box model might have separate boxes for the surface ocean, deep ocean, and atmosphere. The model would then simulate the exchange of carbon dioxide between these boxes through processes such as air-sea gas exchange and vertical mixing. Box models areoften used to study the long-term evolution of ocean pCO2 and its response to changes in atmospheric carbon dioxide concentrations.One-dimensional models are more complex than box models and take into account the vertical structure of the ocean. These models simulate the movement of carbon dioxide within the water column, including processes such as photosynthesis, respiration, and vertical mixing. One-dimensional models are often used to study the seasonal and vertical variations in ocean pCO2.Three-dimensional models are the most complex type of ocean pCO2 dynamics model. These models simulate the movement of carbon dioxide in three dimensions, taking into account the horizontal and vertical circulation of the ocean. They also include processes such as biological production, air-sea gas exchange, and vertical mixing. Three-dimensional models are often used to study thespatial and temporal variations in ocean pCO2, as well as its response to climate change.These models are typically based on a set of mathematical equations that describe the physical and biogeochemical processes occurring in the ocean. The equations are solved numerically using computer simulations. The models require input data such as ocean temperature, salinity, and nutrient concentrations, as well as atmospheric carbon dioxide concentrations and otherrelevant parameters.Ocean pCO2 dynamics models have been used to study a wide range of topics, including the impact of ocean acidification on marine ecosystems, the role of the oceanin absorbing carbon dioxide from the atmosphere, and the feedbacks between the carbon cycle and climate change. They are an important tool for understanding and predicting the future behavior of the ocean carbon cycle.中文回答:海洋pCO2动力学模型用于研究海洋中二氧化碳分压(pCO2)随时间的变化。
C H A P T E R O N EDissolved Organic Matter:Biogeochemistry,Dynamics,and Environmental Significance in SoilsNanthi S.Bolan,*,†Domy C.Adriano,‡Anitha Kunhikrishnan,*,†Trevor James,§Richard McDowell,}and Nicola Senesi #Contents1.Introduction32.Sources,Pools,and Fluxes of Dissolved Organic Matter in Soils 53.Properties and Chemical Composition of Dissolved Organic Matter in Soils133.1.Structural components133.2.Fulvic acid—The dominant component 153.3.Elemental composition204.Mechanisms Regulating Dynamics of Dissolved Organic Matter in Soils204.1.Sorption/complexation 234.2.Biodegradation 274.3.Photodegradation 284.4.Leaching295.Factors Influencing Dynamics of Dissolved Organic Matter in Soils 305.1.Vegetation and land use 315.2.Cultivation325.3.Soil amendments 335.4.Soil pH366.Environmental Significance of Dissolved Organic Matter in Soils 376.1.Soil aggregation and erosion control 376.2.Mobilization and export of nutrients386.3.Bioavailability and ecotoxicology of heavy metals43Advances in Agronomy,Volume 110#2011Elsevier Inc.ISSN 0065-2113,DOI:10.1016/B978-0-12-385531-2.00001-3All rights reserved.*Centre for Environmental Risk Assessment and Remediation (CERAR),University of South Australia,Australia {Cooperative Research Centre for Contaminants Assessment and Remediation of the Environment (CRC CARE),University of South Australia,Australia {University of Georgia,Savannah River Ecology Laboratory,Drawer E,Aiken,South Carolina,USA }AgResearch,Ruakura Research Centre,Hamilton,New Zealand }AgResearch,Invermay Agricultural Centre,Mosgiel,New Zealand #Department of Agroforestal and Environmental Biology and Chemistry,University of Bari,Bari,Italy 12Nanthi S.Bolan et al.6.4.Transformation and transport of organic contaminants506.5.Gaseous emission and atmospheric pollution587.Summary and Research Needs607.1.Macroscale(landscape to global)617.2.Microscale(water bodies and soil profile)617.3.Molecular scale(carbon fractions,organic acids,andmicroorganisms)61 Acknowledgments62 References62“Dissolved organic matter comprises only a small part of soil organicmatter;nevertheless,it affects many processes in soil and water includ-ing the most serious environmental problems like soil and waterpollution and global warming.”(Kalbitz and Kaiser,2003)AbstractDissolved organic matter(DOM)is defined as the organic matter fraction in solution that passes through a0.45m m filter.Although DOM is ubiquitous in terrestrial and aquatic ecosystems,it represents only a small proportion of the total organic matter in soil.However,DOM,being the most mobile and actively cycling organic matter fraction,influences a spectrum of biogeochemical pro-cesses in the aquatic and terrestrial environments.Biological fixation of atmo-spheric CO2during photosynthesis by higher plants is the primary driver of global carbon cycle.A major portion of the carbon in organic matter in the aquatic environment is derived from the transport of carbon produced in the terrestrial environment.However,much of the terrestrially produced DOM is consumed by microbes,photo degraded,or adsorbed in soils and sediments as it passes to the ocean.The majority of DOM in terrestrial and aquatic environ-ments is ultimately returned to atmosphere as CO2through microbial respira-tion,thereby renewing the atmospheric CO2reserve for photosynthesis.Dissolved organic matter plays a significant role in influencing the dynamics and interactions of nutrients and contaminants in soils and microbial functions, thereby serving as a sensitive indicator of shifts in ecological processes.This chapter aims to highlight knowledge on the production of DOM in soils under different management regimes,identify its sources and sinks,and integrate its dynamics with various soil processes.Understanding the significance of DOM in soil processes can enhance development of strategies to mitigate DOM-induced environmental impacts.This review encourages greater interactions between terrestrial and aquatic biogeochemists and ecologists,which is essential for unraveling the fundamental biogeochemical processes involved in the synthesis of DOM in terrestrial ecosystem,its subsequent transport to aquatic ecosystem, and its role in environmental sustainability,buffering of nutrients and pollutants (metal(loid)s and organics),and the net effect on the global carbon cycle.Dissolved Organic Matter31.IntroductionThe total organic matter(TOM)in terrestrial and aquatic environ-ments consists of two operationally defined phases:particulate organic matter(POM)and dissolved organic matter(DOM).For all practical purposes,DOM is defined as the organic matter fraction in solution that passes through a0.45m m filter(Thurman,1985;Zsolnay,2003).Some workers have used finer filter paper(i.e.,0.2m m)in an effort to separate “true”DOM from colloidal materials,but0.45m m filtration appears to be standard(Buffle et al.,1982;Dafner and Wangersky,2002).In some litera-ture,the term dissolved organic carbon(DOC)is used,which represents total organic carbon in solution that passes through a0.45m m filter (Zsolnay,2003).Since carbon represents the bulk of the elemental compo-sition of the organic matter(ca.67%),DOM is often quantified by its carbon content and referred to as DOC.In the case of studies involving soils,the term water-soluble organic matter(WSOM)or water-extractable organic matter(WEOM)is also used when measuring the fraction of the soil organic matter(SOM)extracted with water or dilute salt solution(e.g.,0.5 M K2SO4)that passes through a0.45m m filter(Bolan et al.,1996;Herbert et al.,1993).Recently,the distinction between POM and DOM in the marine environment is being replaced by the idea of an organic matter continuum of gel-like polymers,replete with colloids and crisscrossed by “transparent”polymer strings,sheets,and bundles,from a few to hundreds of micrometers—referred to as oceanic“dark matter”(Dafner and Wangersky,2002).Dissolved organic matter is ubiquitous in terrestrial and aquatic ecosys-tems,but represents only a small proportion of the total organic matter in soil(McGill et al.,1986).However,it is now widely recognized that because DOM is the most mobile and actively cycling organic matter fraction,it influences a myriad of biogeochemical processes in aquatic and terrestrial environments as well as key environmental parameters (Chantigny,2003;Kalbitz et al.,2000;McDowell,2003;Stevenson, 1994;Zsolnay,2003).Dissolved organic carbon has been identified as one of the major components responsible for determining the drinking water quality.For example,DOM leads to the formation of toxic disinfection by-products(DBPs),such as trihalomethanes,after reacting with disinfectants (e.g.,chlorine)during water treatment.Similarly,DOM can be related to bacterial proliferation within the drinking water distribution system.There-fore,the control of DOM has been identified as an important part of the operation of drinking water plants and distribution systems(Volk et al., 2002).In aquatic environments,the easily oxidizable compounds in the DOM can act as chemical and biological oxygen demand compounds, thereby depleting the oxygen concentration of aquifers and influencing4Nanthi S.Bolan et al. aquatic biota(Jones,1992).Dissolved organic carbon can act as a readily available carbon source for anaerobic soil organisms,thereby inducing the reduction of nitrate(denitrification)resulting in the release of green house gases,such as nitrous oxide(N2O)and nitric oxide(NO),which are implicated in ozone depletion(Siemens et al.,2003).Organic pesticides added to soil and aquifers are partitioned preferentially onto DOM,which can act as a vehicle for the movement of pesticide residues to groundwater (Barriuso et al.,1992).Similarly,the organic acids present in the DOM can act as chelating agents,thereby enhancing the mobilization of toxic heavy metals and metalloids[metal(loid)s](Antoniadis and Alloway,2002).The release and retention of DOM are the driving forces controlling a number of pedological processes including podzolization(Hedges,1987).Biological fixation of atmospheric CO2by higher plants during photo-synthesis is the primary driver of global carbon cycle.A major portion of the carbon in aquatic environments is derived from the transport of carbon produced on land.It has been estimated that worldwide about210Mt DOM and170Mt POM are transported annually to oceans from land. Carbon in the ocean is recognized as one of the three main reservoirs of organic material on the planet,equal to the carbon stored in terrestrial plants or soil humus(Hedges,1987).The terrestrially produced DOM is subject to microbial-and photodegradation and adsorption by soil and sediments.The majority of DOM in terrestrial and aquatic environments is returned to the atmosphere as CO2through microbial respiration,thereby ultimately replenishing the atmospheric CO2reserve for photosynthesis and reinvi-gorating the global carbon cycle.Dissolved organic carbon can be envisioned both as a link and bottle-neck among various ecological bined with its dynamic nature,this enables DOM to serve as a sensitive indicator of shifts in ecological processes,especially in aquatic systems.Recently,the significance of DOM in the terrestrial environment has been realized and attempts have been made to extend this knowledge to DOM dynamics in aquatic envir-onments.However,DOM dynamics on land are fundamentally different from those in water,where biomass of primary producers is relatively small, allochthonous sources of DOM are dominant,the surface area of reactive solid particles(i.e.,sediments)is smaller,and the fate of DOM is strongly influenced by photolysis and other light-mediated reactions.In contrast,the dynamics of DOM on land are largely controlled by its interactions with abiotically and biotically reactive solid components.Although there have been a number of reviews on the individual components of DOM in soils(e.g.,sources and sink—Kalbitz et al. (2000);microbial degradation—Marschner and Kalbitz(2003);sorption by soils—Kaiser et al.(1996)),there has been no comprehensive review linking the dynamics of DOM to its environmental significance.This chapter aims to elaborate on the production and degradation of DOM inDissolved Organic Matter5 soils under different landscape conditions,identify its sources and sinks,and integrate its dynamics with environmental impacts.Understanding the long-term control on DOM production and flux in soils will be particularly important in predicting the effects of various environmental changes and management practices on soil carbon dynamics.Improved knowledge on the environmental significance of DOM can enhance the development of strategies to mitigate DOM-induced environmental impacts.It is hoped that this chapter will encourage greater interaction between terrestrial and aquatic biogeochemists and ecologists and stimulate the unraveling of fundamental biogeochemical processes involved in the synthesis and trans-port of DOM in terrestrial and aquatic ecosystems.2.Sources,Pools,and Fluxes of DissolvedOrganic Matter in SoilsNearly all DOM in soils comes from photosynthesis.This represents the various C pools including recent photosynthates,such as leaf litter, throughfall and stemflow(in the case of forest ecosystems),root exudates, and decaying fine roots,as well as decomposition and metabolic by-pro-ducts and leachates of older,microbiologically processed SOM(Figure1) (Guggenberger,et al.,1994a;McDowell,2003;McDowell,et al.,1998). The majority of DOM in soils and aquifers originates from the solubilization of SOM accumulated through vegetation and the addition of biological waste materials(Guggenberger,et al.,1994b;McDowell,2003;McDowell, et al.,1998;Tate and Meyer,1983).The addition of biological waste materials,such as poultry and animal manures and sewage sludges,increases the amount of DOM in soils either by acting as a source of DOM or by enhancing the solubilization of the SOM.Most biological waste materials of plant origin contain large amounts of DOM(Table1)and the addition of certain organic manures such as poultry manure increases the pH and thereby enhances the solubilization of SOM(Schindler et al.,1992).The concentrations of DOM in soils and aquifers are highly susceptible to changes induced by humans,such as cultivation,fire,clear-cutting, wetland drainage,acidic precipitation,eutrophication,and climate change (Kreutzweiser et al.,2008;Laudon et al.,2009;Martinez-Mena et al.,2008; Mattsson et al.,2009;Yallop and Clutterbuck,2009).Dissolved organic matter in environmental samples,such as soils and manures,is often extracted with water or dilute aqueous salt solutions.Various methods have been used to measure the concentration of DOM in extracts (Table2).These methods are grouped into three categories(Moore, 1985;Sharp et al.,2004;Stewart and Wetzel,1981;Tue-Ngeun et al., 2005).The most frequently used method involves the measurement ofabsorption of light by the DOM using a spectrophotometer (Stewart and Wetzel,1981).The second method involves wet oxidation of samples containing DOM and the subsequent measurement of the CO 2released or the amount of oxidant consumed (Ciavatta et al.,1991).This method is often referred to as chemical oxygen demand (COD).Dichromates or permanganates are the most common oxidizing agents used in the wet oxidation of DOM,and the amount of oxidant consumed in the oxidation of DOM is measured either by titration with a reducing agent or by calorimetric methods.The third method involves dry oxidation of DOM to CO 2at high temperature in the presence of a stream of oxygen.The amount of CO 2produced is measured either by infrared (IR)detector or by titration after absorbing in an alkali,or by weight gain after absorbing in ascarite (Bremner and Tabatabai,1971).The most commonly used dry combustion techniques include LECO TM combustion and total organic carbon (TOC)analyzer.B horizonA horizonDOMDOMLitter layer Crop residueC horizonAquiferAgricultural soilForest soil 1111101099886677CO 2CO 2PhotosynthesisPhotosynthesis554433212Parent/geologicmaterialFigure 1Pathways of inputs and outputs of dissolved organic matter (DOM)in forest and agricultural soils.Inputs:1,throughfall and stemflow;2,root exudates;3,microbial lysis;4,humification;5,litter/and crop residue decomposition;6,organic amendments;outputs;7,microbial degradation;8,microbial assimilation;9,lateral flow;10,sorp-tion;11,leaching.6Nanthi S.Bolan et al.Plant litter and humus are the most important sources of DOM in soil,which is confirmed by both field and laboratory (including greenhouse)studies (Kalbitz et al.,2000;Kalbitz et al.,2007;Muller et al.,2009;Table 1Sources of dissolved organic matter input to soilsSourcesTotal organic matter (g C kg À1)Dissolvedorganic matterReference(g C kg À1)(%of total organic matter)Pasture leys Brome grass 13.30.0410.31Shen et al .(2008)Clover 15.10.0390.26Shen et al .(2008)Crowtoe10.40.0360.35Shen et al .(2008)Lucerne Cv.Longdong 11.40.0380.32Shen et al .(2008)Lucerne Cv.Saditi 10.90.0360.33Shen et al .(2008)Sainfoin 13.80.0400.29Shen et al .(2008)Sweet pea 10.20.0340.33Shen et al .(2008)SoilForest soil—litter leachate 60.00.0260.04Jaffrain et al.(2007)Arable soil12.00.150 1.25Gonet et al.(2008)Soil under bermuda grass turf 8.100.300 3.70Provin et al.(2008)Pasture soil 32.0 1.02 3.18Bolan et al.(1996)Pasture soil82.5 3.12 3.80Bolan et al.(1996)Organic amendments Sewage sludge 420 2.420.58Hanc et al.(2009)Sewage sludge 321 6.00 1.87Bolan et al.(1996)Paper sludge 2817.19 2.56Bolan et al.(1996)Poultry manure 4258.18 1.92Bolan et al.(1996)Poultry litter a37775.720.1Guo et al.(2009)Mushroom compost 3857.10 1.84Bolan et al.(1996)Fresh spent mushroom substrate28813346.2Marin-Benito et al.(2009)Composted spentmushroom substrate 27443.415.8Marin-Benito et al.(2009)Separated cow manure 4569.80 2.15Zmora-Nahuma et al.(2005)Poultry manure 4258.18 1.92Bolan et al.(1996)Pig manure2966.132.07Bolan et al.(1996)aBisulfate amended,phytase-diet Delmarva poultry litter.Dissolved Organic Matter 7Table2Selected references on methods of extraction and analysis of DOM in environmental samplesSamples Extraction of DOM Measurement of DOM ReferenceVolcanic ash soils Soil solutions collected by centrifugation ofcores at7200rpm;filtration(0.45m mfilters)DOC by Shimadzu TOC-5000analyzerKawahigashi et al.(2003)Peat—moorsh soil Soil samples were crushed an passed througha1mm sieve,then heated in a redistilledwater at100 C for2h under a reflexcondenser;filtration(0.45m mfilters)DOC by Shimadzu TOC5050A analyzerSzajdak et al.(2007)Soils(medial,amorphic thermic,Humic Haploxerands)Extraction with0.5mol LÀ1K2SO4solution1:5(w/v);filtration(AdvantecMFS Nº5C paper).TOC by combustion at675 Cin an analyzer(Shimadzu—model TOC-V CPN)Undurraga et al.(2009)Moss,litter and topsoil (0–5cm)Aqueous samples were estimated for DOCby oxidation of the sample with asulfochromic mixture(4.9g dmÀ3K2Cr2O7and H2SO4,1:1,w/w)withcolorimetric detection of the reduced Cr3þColorimeter KFK-3at590nm Prokushkin et al.(2006)Soil solutions from forested watersheds of North Carolina Samples werefiltered through a WhatmanG/F glassfiberfilters.Wet combustion persulfatedigestion followed byTOC analyzerQualls and Haines(1991)Organic fertilizer Extracted DOC by0.01M CaCl2solutionwith a solid to solution ratio of1:10(w/v),mixed for30min at200rpm;filtration(0.45m mfilter)Shimadzu TOC-5000ATOC analyzerLi et al.(2005)Soil solution and stream waters along a natural soil catena Soil solution collected by tension-freelysimetersDOC by infrared detectionfollowing persulfateoxidationPalmer et al.(2004)Liquid and solid sludge,farm slurry,fermented straw,soil, and drainage water Water extraction followed by centrifugation(40,000Âg)andfiltration(0.45m mfilter)Dry combustion(DhormannCarbon Analyzer DC-80)Barriuso et al.(1992)Soils,peat extract,sludge,pig and poultry manure and mushroom compost Extracted with water(1:3solid:solution ratio);centrifugation(12,000rpm)andfiltration(0.45m mfilter)Wet chemical oxidation withdichromate followed byback titrationBaskaran et al.(1996)Soil(Entic Haplothord)Extraction with deionized water(1:10solid:solution ratio);filtered through0.45m mpolysulfore membrane Dry combustion(TOCanalyzer Shimadzu5050)Kaiser et al.(1996)Pig manure Extracted with water(1:3solid:solution ratio);shaken at200rpm for16h at4o C;centrifugation(12,000rpm)andfiltration(0.45m mfilter)DOC by Shimadzu TOC-5000A TOC analyzerCheng and Wong(2006)Cow manure slurryfiltered through0.45m m polysulforemembrane TOC analyzer using UVabsorbanceAguilera et al.(2009)Sewage sludge DOC was extracted in a soil:water ratio of1:10(w/v)after1h agitation.Wet combustion withchromate followed by backtitrationGasco´and Lobo(2007)River water Natural water from riverfiltered by0.22m mfilter DOC by wet oxidation TOCanalyzerKrachler et al.(2005)Peat water Peat waterfiltered through0.45m mmembranefilters DOC was analyzed using ahigh-temperature catalyticoxidation method(Dohrman DC-190analyzer)Rixen et al.(2008)River water Filtered through0.7m m glassfiberfilter In situ optical technologyusingfluorescenceSpencer et al.(2007)(continued)Table2(continued)Samples Extraction of DOM Measurement of DOM ReferenceSea water Filtered through0.45m m polysulforemembrane High-temperaturecombustion instrument tomeasure isotopecomposition of DOCLang et al.(2007)Freshwater Filtered through0.7m m glassfiberfilter Acid-peroxydisulfatedigestion and high-temperature catalyticoxidation(HTCO)withUV detectionTue-Ngeun et al.(2005) Effluent water–In situ UV spectrophotometer Rieger et al.(2004)Groundwater,lake water, and effluent –High-performance liquidchromatography-sizeexclusion chromatography-UVAfluorescence systemHer et al.(2003)Sea water and effluent Filtered through0.7m m glassfiberfilter Measurement of carbonatomic emission intensity ininductively coupled plasmaatomic emissionspectrometry(ICP-OES)Maestre et al.(2003)Lake water Water samplesfiltered using precombustedGF/Ffilters TOC analyzer(TOC5000;Shimadzu)Ishikawa et al.(2006)Soil solution and stream water from forested catchments Samples werefiltered through0.45m mfiltersDOC by Shimadzu TOC5050A analyzerVestin et al.(2008)Dissolved Organic Matter11 Sanderman et al.,2008).In forest ecosystems,which are the most intensively studied with regard to C cycling and its associated DOM dynamics,the canopy and forest floor layers are the primary sources of DOM(Kaiser et al., 1996;Kalbitz et al.,2007;Park and Matzner,2003).However,it is still unclear whether DOM originates primarily from recently deposited litter or from relatively stable organic matter in the deeper part of the organic horizon(Kalbitz et al.,2007).In a temperate,deciduous forest,the source of DOM leaching from the forest floor(O layer)is generally a water-soluble material from freshly fallen leaf litter and throughfall(Kalbitz et al.,2007;Qualls et al.,1991).Appar-ently all of the DOM and dissolved organic N(DON)could have origi-nated from the Oi(freshly fallen litter)and Oe(partially decomposed litter) horizons.They further observed that,while about27%of the freshly shed litter C was soluble,only18.4%of the C input in litterfall was leached in solutions from the bottom of the forest floor.Virtually all the DOM leached from the forest floor appeared to have originated from the upper forest floor,with none coming from the lower forest floor—an indication of the role of this litter layer as a sink.The role of freshly deposited litter as DOM source was further corroborated by laboratory studies(Magill and Aber, 2000;Moore and Dalva,2001;Muller et al.,2009;Sanderman et al.,2008). Michalzik and Matzner(1999)found high fluxes of DOM from the Oi layer than from the Oe and Oa layers and indicated that the bottom organic layers acted instead as a sink rather than as a source of DOM.Logically,however, because of the more advanced state of decomposition,the bottom litter layers could produce more DOM than the surface layer.Indeed,Solinger et al.(2001)measured greater DOM fluxes out of the Oa than out of the Oi layer.Recently,Froberg et al.(2003)and Uselman et al.(2007)confirmed with14C data that the Oi layer is not a major source of DOM leached from the Oe layer.In a comprehensive synthesis of42case studies in temperate forests, Michalzik et al.(2001)observed that,although concentrations and fluxes differed widely among sites,the greatest concentrations of DOM(and DON)were generally observed in forest floor leachates from the A horizon and were heavily influenced by annual precipitation.However,somewhat surprisingly,there were no meaningful differences in DOM concentrations and fluxes in forest floor leachates between coniferous and hardwood sites. The flux of soluble organic compounds from throughfall and the litter layer could amount to1–19%of the total litterfall C flux and1–5%of the net primary productivity(Froberg et al.,2007;McDowell and Likens,1988; Qualls et al.,1991).Nearly one-third of the DOM leaving the bottom of the forest floor originated from throughfall and stemflow(Qualls et al.,1991; Uselman et al.,2007).Values for the potential solubility of litter in the field and in laboratory studies are in the5–25%range of the litter dry mass and 5–15%of the litter C content(Hagedorn and Machwitz,2007;McDowell12Nanthi S.Bolan et al. and Likens,1988;Muller et al.,2009;Sanderman et al.,2008;Zsolnay and Steindl,1991).In typical soils,DOM concentrations may decrease by50–90%from the surface organic layers to mineral subsoils(Cronan and Aiken,1985;Dosskey and Bertsch,1997;Worrall and Burt,2007).Similarly,fluxes of DOM in surface soil range from10to85g C mÀ2yrÀ1,decreasing to2–40g C mÀ2 yrÀ1in the subsoils(Neff and Asner,2001).In cultivated and pastoral soils,plant residues provide the major source of DOM,while in forest soils,litter and throughfall serve as the major source (Ghani et al.,2007;Laik et al.,2009).In forest soils,DOM represents a significant proportion of the total C budget.For example,Liu et al.(2002) calculated the total C budgets of Ontario’s forest ecosystems(excluding peat lands)to be12.65Pg(1015g),including1.70Pg in living biomass and10.95 Pg in DOM in soils.Koprivnjak and Moore(1992)determined DOM concentrations and fluxes in a small subarctic catchment,which is composed of an upland component with forest over mineral soils and peat land in the lower section.DOM concentrations were low(1–2mg LÀ1)in precipita-tion and increased in tree and shrub throughfall(17–150mg LÀ1),the leachate of the surface lichens and mosses(30mg LÀ1),and the soil A horizon(40mg LÀ1).Concentrations decreased in the B horizon(17mg LÀ1)and there was evidence of strong DOM adsorption by the subsoils.Khomutova et al.(2000)examined the production of organic matter in undisturbed soil monoliths of a deciduous forest,a pine plantation,and a pasture under constant temperature(20 C)and moisture.After20weeks of leaching with synthetic rain water at pH5,the cumulative values of DOM production followed:coniferous forest>deciduous forest>pasture,the difference being attributed to the nature of carbon compounds in the original residues.The residues from the coniferous forest were found to contain more labile organic components.Among ecosystems types,Zsolnay(1996)indicated that DOM tends to be greater in forest than agricultural soils:5–440mg LÀ1from the forest floor compared with0–70mg LÀ1from arable soils.Other studies have also indicated greater concentrations of DOM and concentrations in grasslands than in arable soils(Ghani et al.,2007;Gregorich et al.,2000;Haynes, 2000).In general,DOM concentration decreases in the order:forest floor> grassland A horizon>arable A horizon(Chantigny,2003).The rhizosphere is commonly associated with large C flux due to root decay and exudation(Muller et al.,2009;Uselman et al.,2007;Vogt et al., 1983).Microbial activity in the rhizosphere is enhanced by readily available organic substances that serve as an energy source for these organisms (Paterson et al.,2007;Phillips et al.,2008).Because of their turnover,soil microbial biomass is also considered as an important source of DOM in soils (Ghani et al.,2007;Steenwerth and Belina,2008;Williams and Edwards, 1993).Thus,microbial metabolites may represent a substantial proportionDissolved Organic Matter13 of the soil’s DOM.It may well be that the rate of DOM production and extent of DOM dynamics in soil is regulated by the rate of litter/residue incorporation in soils,kinetics of their decomposition,and various biotic and abiotic factors(Ghani et al.,2007;Kalbitz et al.,2000;Michalzik and Matzner,1999;Zech et al.,1996).In summary,the various C pools in an ecosystem represent the sources of DOM in soils.Due to their abundance,recently deposited litter and humus are considered the two most important sources of DOM in forest soils. Similarly,recently deposited crop residues and application of organic amendment such as biosolids and manures are the most important sources of DOM in arable soils.However,the role of root decay and/or exudates and microbial metabolites cannot be downplayed in both forested and arable ecosystems.3.Properties and Chemical Composition ofDissolved Organic Matter in Soils3.1.Structural componentsBecause DOM is a heterogeneous composite of soluble organic compounds arising from the decomposition of various carbonaceous materials of plant origin,including soluble microbial metabolites from the organic layers in the case of forest ecosystem,DOM constituents can be grouped into “labile”DOM and“recalcitrant”DOM(Marschner and Kalbitz,2003). Labile DOM consists mainly of simple carbohydrate compounds(i.e., glucose and fructose),low molecular weight(LMW)organic acids,amino sugars,and LMW proteins(Guggenberger et al.,1994b;Kaiser et al.,2001; Qualls and Haines,1992).Recalcitrant DOM consists of polysaccharides (i.e.,breakdown products of cellulose and hemicellulose)and other plant compounds,and/or microbially derived degradation products(Marschner and Kalbitz,2003)(Table3).Soil solution DOM consists of LMW carbox-ylic acids,amino acids,carbohydrates,and fulvic acids—the first comprising less than10%of total DOM in most soil solutions and the last(i.e.,fulvic acid)being typically the most abundant fractions of DOM(Strobel et al., 1999,2001;Thurman,1985;van Hees et al.,1996).Dissolved organic matter is separated into fractions based on solubility, molecular weight,and sorption chromatography.Fractionation of DOM by molecular size and sorption chromatography separate DOM according to properties(hydrophobic and hydrophilic)which regulate its interaction with organic contaminants and soil surfaces.The most common technique for the fractionation of aquatic DOM is based on its sorption to non-ionic and ion-exchange resins(Leenheer,1981).。
生物膜法工艺的英文简介The Biological Membrane Technology is a wastewater treatment process that utilizes a specialized molecular membrane to separate contaminants from water. This technology employs a biofilm, which consists of microorganisms that attach to the membrane surface and metabolize the organic and inorganic compounds present in the water. The biofilm helps to effectively filter and degrade pollutants, resulting in the production of clean water.The Biological Membrane Technology offers several advantages over traditional wastewater treatment methods. It is highly effective in removing various contaminants, including suspended solids, organic matter, and nutrients. The process also requires less space compared to conventional treatment systems, making it suitable for small-scale applications. Additionally, it is energy-efficient and has a low carbon footprint.This technology has found applications in various industries, including municipal wastewater treatment, industrial wastewater treatment, and water reclamation. It can be used for both primary and secondary treatment of wastewater, depending on the level of contaminants present. The effluent produced by this process meets stringent waterquality standards and can be safely discharged or reused for irrigation, industrial processes, or even drinking water purposes.In summary, the Biological Membrane Technology is a sustainable and efficient method for wastewater treatment. It combines the principles of molecular separation and biodegradation to effectively remove contaminants from water, resulting in the production of clean and reusable water resources.。
Biogeochemical processes in intensive zero-effluent marine fish culture with recirculating aerobic and anaerobic biofiltersAmir Neori a,⁎,Michael D.Krom b ,Jaap van Rijn caIsrael Oceanographic and Limnological Research,The National Centre for Mariculture,P .O.Box 1212,Eilat 88112,Israel bEarth and Biosphere Institute,School of Earth and Environment,Leeds University,Leeds LS29JT,United KingdomcDepartment of Animal Sciences,Faculty of Agricultural,Food and Environmental Quality Sciences,The Hebrew University of Jerusalem,Rehovot 76100,IsraelReceived 14December 2006;received in revised form 11April 2007;accepted 20May 2007AbstractThe biogeochemical processes that drive nutrient transformations and recycling in organic marine sediment –water environments were studied for 17months in a zero-effluent intensive recirculating culture system.The system consisted of a 10m 3gilthead seabream (Sparus aurata )tank coupled to aerobic and anaerobic water treatment elements.Nutrients and alkalinity were measured in the system to quantify the main biogeochemical processes.Fractions of the carbon fed in feed were found in fish (18.3%)and in sludge (11%);the missing carbon was respired by fish (45%)and by aerobic (8.4%)and anaerobic (7.7%)microorganisms.Fractions of the nitrogen fed in feed were found in fish (15.4%)and in sludge (14.3%);the missing nitrogen was eliminated by nitrification –denitrification.Most of the phosphorus and ash fed in feed and not found in fish accumulated within the sludge in the system.The rates of nitrification,denitrification and sulphate reduction increased with time,reaching 0.3g N m −2d −1,53g N m −2d −1and 145g S m −2d −1,respectively.Nitrification developed more rapidly than denitrification,leading at first to nitrate accumulation (to 20mmol NO 3l −1by day 200)and a decrease in alkalinity.Once denitrification surpassed nitrification,nitrate concentrations decreased,eventually being reduced to b 0.3mmol NO 3l −1by day 510,and alkalinity stabilized.Toxic hydrogen sulphide,generated within the anaerobic sludge,was oxidized by oxygen and nitrate as it diffused through the anaerobic –aerobic sediment –water interface.When nitrate levels in the water above the sludge dropped below 2mmol l −1,sulphide was also oxidized in the fluidized bed reactor.Denitrification reduced nitrate in the water,respired (jointly with sulphate reduction)carbon in the sludge,oxidized the hydrogen sulphide,and contributed to stabilization of alkalinity and accumulation of polyphosphate in bacteria as a major sink of labile P.©2007Elsevier B.V .All rights reserved.Keywords:Alkalinity;Fish waste treatment;Nitrification –denitrification;Nutrients;Polyphosphate accumulation;Sludge;Sparus aurata ;Sulphate reduction1.IntroductionThe same microbial processes that occur naturally in organic-rich aerobic and anaerobic environments also occur in intensive aquaculture systems (van Rijn,1996).The observations from controlled fish culture systems provide insights into microbial processes and interactions driving the environmental situation in heavily-loaded natural ecosystems.The present study in a novel seawater fish culture system that does not require water discharge,quantified biogeochemical processes by long-term nutri-ent and alkalinity profiles and budgets.This approach has been useful to understand water quality processes andJournal of Experimental Marine Biology and Ecology 349(2007)235–247/locate/jembe⁎Corresponding author.Tel.:+97286361445;fax:+97286375761.E-mail address:aneori@ (A.Neori).0022-0981/$-see front matter ©2007Elsevier B.V .All rights reserved.doi:10.1016/j.jembe.2007.05.023problems in intensive aquaculture systems(e.g.,Krom and Neori,1989;Thoman et al.,2001).Specifically,such studies enable pinpointing of the principle biogeochem-ical processes within such systems(e.g.,Krom,1991). Several of the main processes occurring in sediments involve stoichiometric changes in alkalinity,a feature that provides additional information in the quantitative elucidation of the biogeochemical processes taking place(Lazar et al.,1989).Modern fish mariculture is increasingly criticized for its non-sustainability(Aldhous,2004).It is practiced almost exclusively in flow-through systems such as cages and ponds often in a narrow and heavily populated belt along the coast.Mariculture is subject to public controversy,since it generally discharges effluents without pollutant removal(Naylor et al.,1998).Recircu-lating aquaculture technology can overcome many of aquaculture's economic and environmental limitations, because it combines good regulation of the water quality characteristics with high fish yields,low water use and minimal nutrient export(Saylor et al.,1991;van Rijn, 1996;Gutierrez-Wing and Malone,2006).The advanced biofilter system of recirculating aqua-culture used in the present study is attractive for both freshwater fish(Shnel et al.,2002)and marine fish (Gelfand et al.,2003).The design consists of a fish basin stocked at high fish density.Water from this basin circulates through an aerobic nitrifying filter and through an anaerobic loop,with a sedimentation/digestion basin and a fluidized bed reactor.A particular novelty of the design is the use of the organic fish waste as the carbon and energy source for nitrate reduction(van Rijn,1996). This feature results in minimal environmental pollution and near zero water discharge,without addition of foreign chemicals(e.g.,methanol)to enhance microbial respira-tion.It is possible to operate this system for prolonged periods with water quality parameters remaining within the range of values acceptable for intensive fish culture (Shnel et al.,2002;Gelfand et al.,2003).An important limitation in the large-scale application of the recirculating fishculture approach is the scarcity of information on the microbial populations and processes that drive them(Blancheton,2000).Previous studies on this particular system have looked in detail at several individual microbial processes that occur in various modules of the system(e.g.,Barak et al.,2003;Gelfand et al.,2003;Cytryn et al.,2003,2005,2006).In the present study,biogeochemical processes were quantified through long-term nutrient and alkalinity profiles and budgets.It was found that the closed environment of the fish culture system allowed a fairly accurate estimation of the contribution of the main biochemical processes involved in carbon,nitrogen,sulphur and phosphorus transformations.Processes and rates were compared to those occurring in natural hypertrophic marine environments.2.Materials and methods2.1.Fish culture system2.1.1.ConfigurationThe physical setup has been described in detail (Gelfand et al.,2003;Cytryn et al.,2005).It comprised the following components(Fig.1):(1)a round10,000l polypropylene fish production basin(FT),3m diameter×1.5m depth;(2)a sedimentation basin(SB), 9.5m length×0.5m width×0.3–0.4m depth;working volume:1.5–2m3;(3)a cube-shaped trickling filter(TF), containing3.8m3of a PVC cross-flow medium with a specific surface area of240m2m−3(Jerushalmi Ltd., Israel);(4)a fluidized bed reactor(FBR),made of a Perspex column,200l volume,2m height,36cm diameter.The reactor was filled as bacterial carrier material with several kg sand(N97%SiO2)of1.1mm grain diameter(15%of grains N1.4mm and10%of grains b0.85mm).The system was designed to handle up to6kg d−1of fish feed input.Gilthead seabream(Sparus aurata)were cultured from May2000to August2001. The fish were stocked several times to replace mortalities and to increase fish density as the system matured and water qualitystabilized.Fig.1.A basic schematic of the main components(not to scale), dimensions and water flow rates of the studied facility.Solid arrows mark water flows.236 A.Neori et al./Journal of Experimental Marine Biology and Ecology349(2007)235–2472.1.2.OperationSeawater pumped from the nearby ultra-oligotrophic Gulf of Aqaba(Eilat)filled the system and compensated for water spills and dilutions of the culture water.Tap water diluted the seawater to36parts per thousands(ppt) from its N40ppt natural salinity.Tap water compensated for evaporation loss,which was intense in the summer. Two water loops constituted the water recirculation (Fig.1).In the aerobic loop,water from the top of the FT was pumped and sprinkled over the TF at a rate of15–20m3h−1and drained back to the top of the FT.In the anaerobic loop,the sediment-laden water from the bottom-center of the FT was continuously withdrawn through a standpipe into the SB.From there it was pumped at a rate of1.8–2.4m3h−1upward through the FBR and into the TF intake.A flow of about2.4m3h−1of the FTwater was diverted from the main pump's flow into a foam fractionator(model:TF8AZ,Top Fathom Ltd, USA)for clarification.The force of the water returning from the trickling filter drove a circular water velocity of between30and40cm s−1at the circumference of the FT. Ozone(Pacific Ozone Model G11ozone generator) injected into the foam fractionator disinfected all makeup water.The TF outflow water was enriched,when necessary,with pure oxygen from a liquid oxygen tank. A1hp blower drove air upward through the trickling filter for cooling.An automatic monitoring/alarm system(Point Four,Port Moody,BC,Canada)monitored water level, DO,pH and temperature.Additional measurements of DO were made with a portable Handy Gamma Meter (OxyGuard International A/S,Blokken,Denmark).The fish were fed a commercial feed(Matmor Ltd.,Evtach Israel)with8%water(105°C),44%carbon,45%protein (7.2%N),19.5%lipid,1.4%phosphorus(P),and5kcal energy g−1.Feed was offered according to a standard feeding table(Lupatsch and Kissil,1998,2001),based on the average fish density,size and average water temperature.Seabream of the size range used in this study and fed this diet contain on average317g OM, 212g C,27.2g N,7.2g P,43g ash and2100mega-cal energy per kilogram live weight(Lupatsch and Kissil, 1998,2001).These values were used in mass budgets.A fraction of feed(a total of100kg)was initially put daily into the SB to prime the anaerobic processes until a sufficient quantity of fish waste accumulated.2.2.Analytical procedures2.2.1.Solids analysisAt the end of the study,the sludge accumulated in the SB and the sand-sludge flocks in the FBR were collected and air-dried.The TF plastic medium was disassembled,air-dried and then each piece was strongly beaten over a container to release the dried sludge.For protein analysis, 50g sub samples of the residual solids from each of the biofilters was rinsed with tap water and oven-dried at 60°C for24h followed by drying at105°C to constant weights(%dw content)before TKN(total Kjeldahl N) analysis(Scheiner,1976).For total P content,the oven-dried sludge was pulverized;then500mg of the dry powder was mixed with9ml65%nitric acid and2ml HCl in120ml Teflon PFA digestion vessels.Samples and blanks were prepared for analysis by microwave-assisted digestion(10min in500W and another10min in580W of microwave radiation).Liquid residues were supple-mented with deionized water to a final volume of25ml. Analyses were conducted on portions of the solutions versus certified standards by inductively coupled plasma atomic emission spectrometry(ICP-AES,Spectro Ana-lytical Instruments GmbH&Co.,KG Boschstr.10,47533 Kleve,Germany),equipped with cross-flow nebulizers (precision:b2%;accuracy:b5%).2.2.2.Dissolved nutrients and other compoundsSeveral times a week,at08:00and14:00h,water samples for nutrient analyses were collected from the different components of the system.Nutrients were analyzed by an Auto Analyzer II(Technicon Instruments Co.,Tarrytown,New York).Total ammonia N(TAN)was analyzed by a modification of the Berthelot phenol reaction(Krom et al.,1985).Nitrate and nitrite were analyzed after Solorzano and Sharp(1980).Orthophos-phate was analyzed after Glibert and Loder(1977).Water samples for total hydrogen sulphide were sampled with minimum air exposure.They were preserved immediately with a stabilizing solution of sodium carboxymethyl cellulose and cadmium sulphate,sealed and then analyzed colorimetrically by a sulphide Auto Analyzer II cartridge (Bran+Luebbe GmbH,Werkstraβe4,22844Norder-stedt,Schleswig-Holstein,Germany),using a reaction with dimethyl-p-phenylenediamine dihydrochloride and ferric chloride to yield methylene blue(Method No.G-193-97of Bran+Luebbe,based on Grasshoff et al., 1983).The pH was measured with a HI8424pH meter (Hanna Instruments Ltd.,Bedfordshire,England)and total alkalinity(precision b2%)was determined by titration with hydrochloric acid(Parsons et al.,1984). 3.Results and discussion3.1.Feed,water use,fish growthThe fish were fed in total1158kg feed(8%moisture). An additional100kg feed was added directly to the SB in237A.Neori et al./Journal of Experimental Marine Biology and Ecology349(2007)235–247order to speed up the development of anaerobic conditions(i.e.,b1mg l−1DO),so that the total dw feed input was1157kg(Table1).Filling the tanks and making up for various water losses,mostly by evaporation(up to 0.5m3d−1in summer),consumed a total of only25m3of seawater and105m3of tap water.Specific total use of water was only0.265m3kg−1of gross fish production. Overall,699kg fish biomass was stocked and490kg biomass was produced.Over the entire512day study,the daily production rate averaged1.2kg(0.41%fish weight d−1)for an average seabream standing stock of271kg (partially reported in Gelfand et al.,2003).3.2.Carbon,nitrogen and phosphorus recovery in fish and sludgeThe fractions of the nutrients introduced into the system as feed that were recovered in fish growth were 18.3%C and15.4%N(Table1),at the low end of the range of15–30%reported from nutrient budgets of this fish(Krom and Neori,1989;Lupatsch and Kissil,1998). Higher values of C and N recovery in seabream growth have more recently been obtained in technically im-proved systems of this design(van Rijn,unpublished; Neori,unpublished).Only11%of the carbon budget and 14%of the nitrogen budget were recovered in sludge, mainly in the oxic sludge.The rest of the nutrients–over 70%of carbon and nitrogen inputs–were missing from this total budget.In contrast,nearly all added P was recovered,with21%in fish,5%in dissolved phosphate and the rest in sludge(Table1).The budgets for dry weight and for energy content paralleled those for C and N,while the ash budget paralleled the P budget.A comparison of the overall quantities of sludge production,composition and processes found in this study(Table1)with budgets reviewed by Chen et al. (1997)for several different recirculating culture systems with different fish,highlights similarities and differ-ences.The fraction of feed dw recovered in sludge in the present data(22.5%)was in the low range of the recoveries defined as“typical”in Chen et al.(1997)of 20%–50%;it is an expression of the high rate of sludge decomposition in the SB.The fraction of feed TKN recovered as sludge TKN in the present data was12.1%, compared with a recovery of9.8%that can be calculated from the data in Chen et al.(1997)for a channel catfish (Ictalurus punctatus)recirculating N content of4.2%in the accumulated sludge in the present study is similar to the mean of4.0%in Chen et al.(1997). However,while in the present system the remaining 70%N not assimilated by fish or in sludge was denitrified to N2(see below),in the single-loop culture systems reviewed in Chen et al.(1997)this N was discharged with effluents as nitrate and created a pollution hazard.An additional striking difference between the present data and other recirculating fish culture systems is in the fraction of feed P that was recovered in the sludge.In the present study nearly all P not found in fish was recovered as sludge,whose P content in dw totaled 5.9%(Table1).In other aquaculture systems,on the contrary,most of waste P was discharged as dissolved P while sludge P content averaged only0.7%(Chen et al.,1997).3.3.Dissolved nutrients dynamics and transformationsThe nutrients entered in the seawater and tap water constituted b1%of feed input for each of the nutrients, both because of the low water use and the low concentration of nutrients in both sources of water.Table1Budgets of the main ingredients of the fish feed introduced to the fish culture system in17monthsIngredient:DW C N P Ash Energy('000kcal) Budget component1.Feed inputa.(kg)11575579117.61456374b.%100100100100100100 Outputs2.In produced fish(%of line1)15.818.315.42115.216.83.In waste(%of line1)a.Anoxic sludge(SB+FBR)10 3.95 4.450.648.3 3.2b.Oxic sludge(TF)12.5 6.87.736.944.17.3c.Water0b0.1 2.2 5.1004.Total waste(%of line1)22.510.7514.392.692.410.55.Missing nutrient fractions(lines2and4subtracted from line1)a%of line161.770.9570.3−13.6−7.672.7a A negative value indicates that the system contained a quantity of the substance larger than the input.238 A.Neori et al./Journal of Experimental Marine Biology and Ecology349(2007)235–247Ammonia (analyzed as TAN),a major excretion product of the fish,accumulated in the water immedi-ately after initiation of feeding.TAN concentration peaked at nearly 200μmol l −1at day 10,and gradually decreased below 50μmol l −1(Fig.2).It remained low until day 370,except for a peak of ∼2700μmol l −1,which developed on day 78following a partial drying of the TF due to a burnout of the main water pump.After day 370,the ammonia concentration circulating through the system increased to between 50and 250μmol l −1.Nitrate concentration reached 20mmol l −1by day 200(Fig.2).After day 270,it gradually dropped,to b 5mmol l −1by day 370and b 0.3mmol l −1at the end of the study.Based on our data,nitrification and denitrification were the dominant microbial N transformations within the system.Nitrification developed shortly after start up of the system.A dynamic balance between ammonia production and nitrification kept ammonia levels at this time by and large below 50μmol l − nitrification,calculated by the difference between expected quantities of ammonia (5%of total feed input —Lupatsch and Kissil,1998,2001)and measured ammonia in the watermultiplied by water volume,matched the increase in feeding.It increased from 5.9mol N d −1(1–270days)to 10.0mol N d −1(270–370days)and to 16.5mol N d −1for the last 130days (Table 2).The overall average nitrification rate for the entire period was 9mol N d −1.It is likely that nitrification occurred mostly in the TF and on other wet surfaces,including the top of the SB sludge and in the FBR,where ammonia produced by anaerobic respiration processes could become exposedtoFig. 2.Total ammonia N (TAN),nitrate and orthophosphate concentrations in the fish basin during the study.Table 2Total changes in titration alkalinity and associated parameters in the system over the following three periods:Period 1)from day 1to day 270(270days)when the system operated in net nitrification mode;Period 2)from day 270to day 370(100days)when the system operated in net denitrification mode;Period 3)from day 370to day 500(130days)when the system operated in net denitrification mode with leakage of ammonia and hydrogen sulphide in the anaerobic loop Measured parameters Period 1Period 2Period 31.Alkalinity in seawater inflow (equivalents)6715.5572.Alkalinity in tap water inflow (equivalents)6210.6553.Alkalinity in water outflow (equivalents)−59−8.7504.Alkalinity added as bicarbonate (equivalents)321005.Measured net change in alkalinity (equivalents)5.28.5−9.86.Dissolved N excreted by fish asammonia and reactive DON (moles)142883219787.Dissolved N released from labile organic matter in SB (moles)175172165.58.Nitrate accumulation in FT water,Fig.2(moles)263.5−99−61.53Calculated parameters (see text)9.Total nitrification (TN)(moles)(Eq.(6))16031004214310.Total denitrification (TDN)(moles)(Eq.(8))13401103220511.Presumed net alkalinity production,sum of lines 1–5(equivalents)3871012212Calculated surplus of alkalinityproduced,line 11,but not matched by the accumulation of nitrate,line 8(equivalents)(Eq.(11))123109183Calculated daily rates of microbial processes 13.Total nitrification rate (mol d −1) 5.910.016.514.Total denitrification rate (mol d −1) 5.011.017.015.Alkalinity surplus (sulphate reduction)rate (equivalents d −1)0.461.1 1.4All units are equivalents (for alkalinity)or moles (for dissolved nitrogen).239A.Neori et al./Journal of Experimental Marine Biology and Ecology 349(2007)235–247dissolved oxygen in the overlying water(Blackburn, 1986).The average and maximum nitrification rates divided by the total area of the TF and other wet surfaces were0.126and0.3g N m−2d−1,respectively.Values of up to0.28g N m−2d−1have been reported for other marine nitrifying trickling filters(Nijhof and Boven-deur,1990;Eding et al.,2006).Denitrification devel-oped more slowly than nitrification(Tables2,3),so that a shift from net accumulation to net consumption of nitrate occurred only after day270.This was twice the time it took in freshwater systems of similar design (Shnell et al.,2002;Gelfand et al.,2003).Dissolved orthophosphate is produced by fish and microbial respiration.Orthophosphate concentrations in the water(Fig.2)gradually increased to a value of2.5mmol l−1by day300.Then,during the period of intense denitrification,dissolved phosphate levels decreased to1.2mmol l−1by day370.After nitrate dropped below5mmol l−1and begun to rise again, phosphate concentration also rose,to about3mmol l−1 by day410(Fig.2).There was no detectable hydrogen sulphide circulat-ing in the water until about day370(data not shown). Then as nitrate levels dropped below2mmol l−1, hydrogen sulphide gradually appeared in the water overlying the sludge in the SB.Concentrations of up to 500μmol l−1were measured there at the end of the study(Fig.3).Microbial processes in the FBR con-sumed most of the hydrogen sulphide that escaped the SB before the water returned to the main water loop. Hydrogen sulphide that escaped the FBR disappeared in the trickling filter,by either evaporation or oxidation, leading to levels considered safe for fish in Bagarinao and Lantin-Olaguer(1998)of b5μmol l−1in the fish basin water(Fig.3).The rate of hydrogen sulphide release to the SB water was inversely related to nitrate concentration(Fig.4). Sulphide release started at∼350mmol S d−1at nitrate concentrations below2mmol l−1increasing to18mol S d−1when nitrate concentration dropped below0.2mmol l−1(Fig.4).Nitrate concentrations above2mmol l−1have been shown to totally inhibit sulphate reduction in organically-rich aquatic sediments(Lucassen et al., 2004).The removal of sulphide and nitrate together in the FBR suggests that a principle process for sulphide oxidation was autotrophic denitrification(Cytryn et al., 2005,2006).Oxidation of hydrogen sulphide in the FBR was proportional to its concentration in the water leaving the SB(Fig.5),reaching a rate of over100mmol S l−1 d−1.Considering the extreme toxicity to fish of hydrogen sulphide(96h LC50=60μmol S l−1in Bagarinao and Lantin-Olaguer,1998),it can be calculated that without itsTable3Net rates of denitrification in the system,assuming it took place in the SB,based on maximal rates of nitrate disappearance from the water during the indicated periods(negative linear slopes in Fig.2nitrate curve)Denitrification rates Period:June–July2000July–August2000January–March2001Totalg N d−180187249mol N d−1 5.713.417.8Areal in SB ag N m−2d−1173953mol N m−2d−1 1.2 2.8 3.8 Volumetric in SB amg N l−1d−146106143m mol N l−1d−1 3.37.610.2a Per surface area and volume(4.75m2and1750l,respectively)of theSB.Fig.3.Hydrogen sulphide concentration in the water exiting the fish basin,sedimentation basin(SB)and FBR during the final months of thestudy.Fig.4.Concentration of hydrogen sulphide(open triangles,right Y axis)and rate of production(closed circles,left Y axis)in the SB as a function of nitrate concentration in the system water.240 A.Neori et al./Journal of Experimental Marine Biology and Ecology349(2007)235–247oxidation hydrogen sulphide concentration in the FT could have reached toxic levels in 1–2h.Significant sulphate reduction to sulphide apparently occurred in the lower layers of the SB all the time.Sulphate reduction estimates based on alkalinity surplus (explained below)increased with time in parallel with the increase in denitrification (Table 2).Hydrogen sulphide levels of up to 6mmol l −1were determined in the pore waters of the bottom layers of the SB anoxic sludge in a very similar system (Cytryn et al.,2003).However,during the first 370days of the present study,no sulphide was detected in the overlying water of the SB.This was probably due to oxidation in the boundary layer between sludge and water,where white patches of elemental S were often visible.Reduced solutes –sulphides and ammonia –escaped into the overlying water only when limits were reached with regard to the oxidative capacity of the boundary layer.Microbial redox recycling processes are characteristic of the aerobic/anaerobic boundary in organic marine sedi-ments and are particularly important in the oxidation of sulphide (Blackburn,1986).Typically,more than 90%of the sulphide produced in marine sediments is reoxidized in this boundary layer (Jorgensen,1980;Canfield et al.,1993).Oxidation by dissolved oxygen is generally considered the most important oxidative process occurring in marine sediments.However,here the artificial conditions created very high-nitrate con-centrations in the SB sludge's overlying water,a situation that is rare in nature.In natural marine sediments,autotrophic denitrification has been reported at nitrate concentration of only 0.025mmol l −1.Even at those low concentrations,the process was considered of quantitative importance for the C,N and S cycles in thatsediment (Fossing et al.,1995).With nitrate concentra-tions orders of magnitude higher,it is likely that oxidation by nitrate was the most significant process for the oxidation of sulphide in the present system.3.4.Alkalinity and the biogeochemical processes 3.4.1.Alkalinity dynamicsAlkalinity of the initial seawater was 2.3mEq l −1while the alkalinity of the tap water was 1.2mEq l −1.Alkalinity values for most of the first 3months of the study are missing.However,during this time only 72kg feed was introduced to the system out of a total of 1258kg during the entire 17months,and,therefore,the error introduced to the quantitative analyses of the processes should be minor.Initially,when nitrate accumulated in the system,pH dropped below 6.0while also alkalinity steeply declined,reaching a low point after 3months (Fig.6).Brief but sharp rises in alkalinity and pH (with a simultaneous sharp dropinFig.5.Relationship between concentration of hydrogen sulphide in the water leaving the SB into the FBR and the rate of change in hydrogen sulphide (negative units)in the FBR;data,solid circles;regression,line (Y =−29X −376;r 2=0.912;p b0.0001).Fig.6.Alkalinity in water exiting the trickling filter and the SB,and pH in the fish basin during the study.241A.Neori et al./Journal of Experimental Marine Biology and Ecology 349(2007)235–247nitrate concentration)followed the temporary removalof the fish between days 99and 128.Sodium bicarbonate buffer (totaling 27kg,321equivalents)was added occasionally between days 74to 99and days 194to 293to restore alkalinity.During the initial 3months period,once measured,alkalinity levels in the various modules of the system were low and did not differ significantly between the modules (Figs.6,7).Between day 200and 270,when denitrification matched and then surpassed nitrification (Table 2),alkalinity rose to 3mEq l −1and pH stabilized (Fig.6).After day 270,as a result of the intense denitrification,alkalinity gradually increased to 4–5mEq l −1.Typically,during this latter period there was an increase in alkalinity of 0.2–0.3mEq l −1in the water as it passed through the anaerobic loop (Fig.7),indicating large net alkalinity generation by anaerobic processes.After day 370,alkalinity generation in the SB was balanced by consumption elsewhere in the system and the overall alkalinity stabilized at close to 3mEq l −1without any further addition of bicarbonate buffer.From day 200until the end of the experiment,the pH of the entire fish culture system stabilized at just above 7with minor fluctuations (Fig.6).3.4.2.Alkalinity budgets and contingent biogeochem-ical processesAlkalinity budgets (Table 2)were calculated over the following three biogeochemically distinct periods:(1)period 1(first 270days)net nitrification (accumu-lation of nitrate);(2)period 2(from day 270to 370)net denitrification (nitrate levels dropped sharply);and (3)period 3(day 370–500)net denitrification accom-panied by leakage of ammonia and hydrogen sulphidefrom the SB sludge into the overlying SB water.The budgets were calculated using the following assumptions and equations (derived from Lazar et al.,1989;van Rijn et al.,2006).During microbial nitrification of ammonia 1equivalent (Eq)of alkalinity is consumed per mol of ammonia oxidized (Eq.(1)below).During denitrifica-tion 1Eq of alkalinity is produced per mol of nitrate reduced to nitrogen gas,whether the process involved is heterotrophic denitrification (Eq.(2))or autotrophic denitrification with H 2S (Eq.(3))coupled to sulphate reduction to produce H 2S (Eq.(4)).The rearrangement of Eqs.(3)and (4)in Eq.(5)assumes that dissimilatory reduction of nitrate to ammonia is not significant.Nitrification:NH 3þ2O 2¼NO −3þH þþH 2Oð1ÞHeterotrophic denitrification2NO −3þ½5H 2 þ2H þ¼N 2þ6H 2Oð2ÞAutotrophic denitrification with H 2S5H 2S þ8NO −3→5SO 2−4þ4N 2þ4H 2O þ2Hþð3ÞSulphate reduction to produce H 2S5SO 2−4þ½20H 2 þ10H þ→5H 2S þ20H 2Oð4ÞA rearrangement of Eqs.(3)and (4)8NO −3þ½20H 2 þ8H þ→4N 2þ24H 2Oð5ÞFor each of the three defined time periods,with insignificant amounts of ammonia accumulating in the system,total nitrification (TN)is the sum of the ammonia produced from fish excretion (N fish )and from decompo-sition of organic matter in the SB (N SB ;Eq.(6))TN ¼N fish þN SBð6ÞTotal net nitrification (TNN)is total nitrification (TN)minus total denitrification (TDN)and equals the amount of nitrate accumulated during the period considered.TNN ¼TN −TDN ¼▵NO 3ð7ÞRearranging Eq.(7)TDN ¼TN −▵NO 3ð8ÞAssuming that the only microbial processes that result in a change of alkalinity are nitrification and denitrification,then the change in alkalinity (▵Alk)Fig.7.The differences in water alkalinity between the trickling filter and fish basin and between the sedimentation basin and the fish basin during the study.242 A.Neori et al./Journal of Experimental Marine Biology and Ecology 349(2007)235–247。