Glycerol-effects-on-protein-flexibility-a-tryptophan-phosphorescence-study_1993_Biophysical-Journal

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BiophysicalJournalVolume65

July1993131-137

GlycerolEffects

onProteinFlexibility:

ATryptophanPhosphorescence

Study

MargheritaGonnelliandGiovanniB.Strambini

ConsiglioNazionale

delleRicerche,

Istitutodi

Biofisica,

ViaS.Lorenzo26,

56127Pisa,Italy

ABSTRACTInexploring

thedynamic

properties

ofproteinstructure,

numerousstudieshavefocussed

onthe

dependenceof

structuralfluctuationsonsolventviscosity,

buttheemergingpicture

isstillnotwelldefined.

Exploiting

thesensitivity

ofthe

phosphorescencelifetimeoftryptophan

totheviscosity

ofitsenvironment

wehaveusedthe

delayed

emission

asanintrinsic

probeofproteinflexibility

andinvestigated

theeffectsof

glycerol

asaviscogenic

cosolvent.The

phosphorescence

lifetimeof

alcoholdehydrogenase,alkalinephosphatase,apoazurin

andRNase

T1,

asa

functionof

glycerol

concentration

wasstudied

atvarioustemperatures.Flexibility

data,

whichrefertorather

rigid

sitesofthe

globularstructures,

point

outthat,

for

some

concentrationrangesglycerol,

effects

ontherateof

structuralfluctuationsofalcohol

dehydrogenase

andRNaseT1donot

obey

Kramers'apowerlawonsolventviscosityandemphasizethatcosolvent-inducedstructuralchangescanbeimportant,

even

forinner

coresofthemacromolecule.Whenthedatais

analyzed

intermsofKramers'model,

forthetemperature

range0-30°C

onederivesfrictionalcoefficientsthat

arerelativelylarge(0.6-0.7)

forRNase

T1,

wheretheprobe

isinaflexible

region

near

thesurface

ofthemacromolecule

andmuch

smaller,

lessthan0.2,

forthe

rigid

sitesoftheother

proteins.

Forthelattersites

thefrictionalcoefficient

rises

sharply

between40and

60°C,

anditsvaluecorrelates

weakly

withmolecular

parameterssuch

asthedepthofburialortherigidityof

aparticular

site.ForRNase

T1,coupling

tosolventviscosity

increasesatsubzero

temperatures,withthecoefficientbecoming

aslarge

as1at-200C.

Temperature

effects

wereinterpretedbyproposing

that

solventdampingofinternalprotein

motionsis

particularly

effectiveforlow

frequency,largeamplitude,

structuralfluctuations

yieldinghighlyflexibleconformersofthemacromolecule.

INTRODUCTIONArange

ofexperimentalapproacheshaveestablished

the

importanceofconformationaldynamicsinproteinsboth

as

anintrinsicphysicalpropertyofthemacromoleculeandinenzyme-catalyzedchemicalreactions.Awealthofstructural(1-6)anddynamical(7-12)informationshaverevealedahierarchyofatomicdisplacementamplitudesandfrequen-ciesofstructuralfluctuations.Thenatureofthesemotionsrangefromlocalvibrationsofatomsandgroupsofatomstoglobalchangesofrelativepositionsofwholedomainsandtheircharacteristictimescalestretchfromfractionsofapi-cosecondtoseconds.Eithertypeofmotionsdependinsomewayonenvironmentalfactorssuchassolventcomposition,pH,ionicstrength,andviscosity.Apopularapproachforinvestigatingtheimportanceofproteindynamicsinchemicalreactionsistostudytheeffectofthemediumviscosity.Kramers'theory(13)modelsthekineticsofchemicalreactionsandrelatesthereactionratetotheviscosity,q,ofthereactantsenvironmentasfollows:Rateconstant=(Bk)qk)exp(-E*IRT)(1)whereBisaconstant,E*istheheightofthepotentialenergybarrierandk<1isthefrictionalcoefficientwhichisequalto1inthehighviscositylimit.UsefulextentionsofthetheorytointramolecularactivatedprocessesinproteinsweregivenbyGavish(14,15),Doster(16),andSchlitter(17).IntreatingReceivedforpublication10November1992andinfinalform8February1993.AddressreprintrequeststoGiovanniB.Strambini.@1993bytheBiophysicalSociety0006-3495/93/07/131/07$2.00thedampingofstructuralfluctuationsinproteinsbythevis-cousdragofthesolvent,theyshowthatthedegreeofcou-plingofproteinandsolventmotionsdecreases

themore

internalandrigidis

theregionof

themacromolecule

con-

cemed.Inrecentyearsanumberofexperimentshave

confirmed

theviscositydependenceof

avarietyofintramolecular

pro-

cesses.ThevalidityofKramer's

lawhasbeentestedexper-

imentallyforpolymer

dynamics

(18)

andbycomputersim-

ulations(19,20).Withproteins,

increasedsolvent

viscosity

wasshowntoslowdownrotational

motionsofintrinsicar-

omaticaminoacidside-chains(21,22)

andattachedspin-

labelprobes(23)and

toreducekinetic

coefficientsofligand

binding(24-27),ofhydrogenisotope

exchange(28-30),

and

ofanumberofenzymatic

reaction(14,31,32).

Generally,

thesestudieshaveconcerned

rathersuperficial

orsolvent/

ligand-accessiblesitesof

themacromolecule,

which,being

inmoreor

less

intimatecontactwiththesolvent,represent

ratherflexibleregionsoftheglobular

structure.Withincer-

tainsolventviscosity

rangestherate

isoften

foundtoobey

apowerlawwitha

frictionalcoefficient,

k,lessthan1;

smallervalueswereobtainedwhenmore

internal

regionsof

themacromolecule

are

concerned

(23).However,anotable

exceptiontothis

pattern

isrepresentedbythe

slowexchang-