SMS使用简明教程

SMS的使⽤⽅法序列处理在线⼯具包(Sequence Manipulation Suite) 是DNA与蛋⽩序列分析与格式化在线⼯具的集合。

程序以HTML格式输出结果，可以作为标准web页由浏览器读取，可以打印与保存结果，也可⽤HTML编辑器或⽂本编辑器进⾏编辑。

这个在线⼯具主要对DNA/RNA和蛋⽩质序列进⾏处理和分析。

个⼈认为⽐较实⽤的功能是：DNA/蛋⽩质序列过滤器，反序与补序⼯具，DNA/蛋⽩质序列分组⼯具，翻译和蛋⽩分⼦量，下⾯进⾏全⾯的介绍：1.格式转换（1）FASTA序列粘合功能：将多条FASTA格式的序列粘合为⼀条。

在程序只接受⼀条序列输⼊，且需要同时分析多条序列数据时将会⽤到此⼯具。

FASTA格式序列输⼊（粘帖）到下来输⼊框。

上限为500000 个碱基.（2）EMBL 转FASTA功能：将EMBL格式序列⽂件转换成FASTA格式序列⽂件。

该程序可快速去除EMBL格式⽂件中的⾮DNA序列信息。

将⼀条或多条EMBL格式序列输⼊（粘帖）到下列⽂本框。

输⼊上限200000 个碱基。

（3）EMBL序列特征提取：在输⼊的序列中提取出特征信息，并以FASTA格式返回序列特征。

该程序适⽤于在含有⼤量内含⼦的基因组序列中得到cDNA。

将⼀条或多条EMBL格式序列输⼊（粘帖）到⽂本框。

输⼊上限为200000 个碱基。

（4）EMBL 序列转换功能：将输⼊的EMBL格式的基因序列转换为相应的FASTA格式的蛋⽩质序列。

将序列输⼊（粘帖）到⽂本框. 输⼊上限为200000 个碱基.（5）DNA/蛋⽩质过滤:⽤于去除序列中的⾮DNA/蛋⽩质字符。

可以除序列中的数字、空格，不论序列⾥原来有什么，是什么格式，经过过滤之后就只有序列了（没有空格的），很清爽，可以很⽅便的⽤于后⾯的分析。

将序列输⼊（粘帖）到⽂本框，输⼊上限为500000 个碱基。

（6）GenBank 转FASTA功能：将输⼊的GenBank序列⽂件转换成FASTA格式序列⽂件。

The sponsorship management system (SMS) manuals Step by step guide for sponsorsManual 10 of 12: Miscellaneous CoS functionsContentsAdditional SMS manuals (3)Glossary (7)CoS status (8)SMS guides (9)Guide 1: How to transfer CoS ownership, view CoS history and other CoS administration functions (9)Guide 2: How to transfer a batch of CoS to another user (18)Guide 3: How to withdraw an unused CoS (23)Guide 4: How to add, amend or delete work addresses (27)_________________________________________________________________________________________________________________________________Additional SMS manualsThere are 12 SMS manuals available, plus two supplementary policy guides for completing a CoS and CAS. The manuals are grouped into three categories: common, CAS and CoS. The table below describes the purpose and audience of each manual.You should read all manuals applicable to your licence before contacting the relevant helpdesk.ManualreferenceManual title Type Purpose AudienceManual 1Introduction to SMS Common Use this manual to log into SMS, change yourpassword, manage SMS users and viewimportant messages posted by the HomeOffice.In addition, this manual explains who shoulduse SMS and for what purpose. The manualfeatures a full introduction to SMS as well asa comprehensive troubleshooting section.All sponsorsManual 2Managing your licence CommonTo help sponsors manage their keypersonnel, change their licence details,manage PAYE references, and apply forallocations of CoS/CAS.All sponsorsManual 3Applications, renewals and services Common To help sponsors apply for Premium customerservice, apply for, renew or decline to renewStudent Sponsor status, renew or decline torenew your licence renewal, and manageaction plans.All sponsors_________________________________________________________________________________________________________________________________ManualreferenceManual title Type Purpose AudienceManual 4Creating and assigning CAS CAS To help sponsors create and assign individualand batches of CAS.Sponsorslicensed in theStudent RouteManual 4a Creating a CAS – guide foreducation sponsorsCASThis manual contains supplementaryinformation on completing a CAS. Use thisguide to determine what information isnecessary in each field of the CAS.Sponsorslicensed in theStudent RouteManual 5Reporting student activity CASTo help sponsors report student activity, forexample if a student’s circumstances changeor submitting a graduate notification. Thismanual also contains help with reporting feeupdates and adding sponsor notes to CASthat have already been assigned.Sponsorslicensed in theStudent RouteManual 6Miscellaneous CAS functions CAS To help sponsors complete all other functionsof CAS, such as managing batches of CAS,managing pre-stored addresses for use whencreating CAS, transferring ownership of CAS,printing CAS and exporting CAS.Sponsorslicensed in theStudent RouteManual 7Bulk Data Transfer of CAS CAS To help sponsors use the bulk data transfer(BDT) functions of SMS, including graduatenotifications. You must have a bespoke ITsystem in place to use BDT.Sponsorslicensed in theStudent Route_________________________________________________________________________________________________________________________________ManualreferenceManual title Type Purpose AudienceManual 8Creating and assigning CoS CoS To help sponsors create and assign individualand batches of CoS.Sponsorslicensed in anyWorker orTemporaryWorker routeManual 8a Creating a CoS – guide for businesssponsorsCoSThis guide contains supplementaryinformation on completing a CoS. Use thisguide to determine what information isnecessary in each field of the CoS.Sponsorslicensed in anyWorker orTemporaryWorker routeManual 9Reporting worker activity CoSTo help sponsors report worker activity, forexample if a worker’s circumstances change.This manual also contains help with addingsponsor notes to CoS that have already beenassigned.Sponsorslicensed in anyWorker orTemporaryWorker routeManual 10Miscellaneous CoS functions CoS To help sponsors complete all other functionsof CoS, such as managing batches of CoS,managing pre-stored addresses for use whencreating CoS, transferring ownership of CoS,and printing CoS.Sponsorslicensed in anyWorker orTemporaryWorker route_________________________________________________________________________________________________________________________________ManualreferenceManual title Type Purpose AudienceManual 11Temporary Work – Creative WorkerGroup of CoSCoSTo help sponsors create and manage groupsof CoS. Groups of CoS are only available tosponsors licensed in Temporary Work -Creative WorkerSponsorslicensed in theTemporary Work -Creative WorkRouteManual 12Defined CoS CoS To help sponsors apply for defined CoS, trackapplications for defined CoS and oncegranted, create defined CoS.Sponsorslicensed in SkilledWorker_________________________________________________________________________________________________________________________________GlossaryTerm MeaningSMS Sponsorship Management SystemCoS Certificate of SponsorshipCAS Confirmation of Acceptance for StudiesAO Authorising OfficerKC Key ContactBDT Bulk Data TransferSELT Secure English Language Test.XML Extensible Mark-up Language.PDF Portable Document FormatAutomation On 6April 2014 we introduced new functionality in SMS to automatically renew CoS allocations and to apply changes to your organisation address, or the address of your AO and KC. We will write to you if you meet the criteria and automation has been set._________________________________________________________________________________________________________________________________CoS statusThe table below shows each status which can apply to a CoS.As seen in SMS MeaningWORK INPROGRESSThe CoS is still in ‘draft’ form as one or more mandatory details have yet to be completed.READY TO GO The CoS has been created and is ready to be assigned to an individual.ASSIGNED All mandatory fields are complete and the CoS is ready to use in support of an application for leave to enter or remain. WITHDRAWN You have withdrawn the CoS.USED The CoS has been used in support of an individual’s application for leave to enter or remain.EXPIRED EITHER: The individual has not made an application for leave to enter or remain by the expiry date of the CoS. A new CoS is required;OR: The individual has applied by the CoS expiry date but we have not considered their application before that date. In this case, no action is required on your part; we will change the status of the CoS from EXPIRED to USED when the application is considered.CANCELLED The CoS has been cancelled as your licence has been revoked or has expired, or you have surrendered the relevant routes / your whole licence prior to the CoS being used._________________________________________________________________________________________________________________________________SMS guidesGuide 1: How to transfer CoS ownership, view CoS history and other CoS administration functions Follow the step by step instructions below to perform CoS administration tasks, which includes:•viewing CoS details;•printing a CoS for your records or for a migrant to use in support of their application;•transferring ownership of CoS between SMS users;•viewing the history of ownership of a CoS; and•viewing reported history of a CoS.___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________to displayto transfer a CoS_________________________________________________________________________________________________________________________________screen, select the relevant user fromView CoS__________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________1. The keyboard shortcut for printing is CTRL+P on a computer running Windows or CMD+P on a computer running OSX.2. You will only be able to open and print the PDF version of the CoS if you have the appropriate software installed, such as Adobe _________________________________________________________________________________________________________________________________current status. When complete select_________________________________________________________________________________________________________________________________screen you can see when the activityto return to the_________________________________________________________________________________________________________________________________Guide 2: How to transfer a batch of CoS to another userFollow the step by step instructions below to transfer ownership of a batch to another user. This function is useful if an existing SMS user will no longer be using SMS, or if a SMS user is taking ownership of another SMS u ser’s workload.__________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________If your search parameters are not specific, you will be presented with a long list of batches. This screen is not featured in this guide. _________________________________________________________________________________________________________________________________screen,__________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________Guide 3: How to withdraw an unused CoSFollow the step by step instructions below to withdraw a CoS with the ASSIGNED status. This function is useful if you decide not to sponsor a migrant before the CoS has been used in an application for leave to enter, leave to remain or worker authorisation.CoS with the following statuses cannot be withdrawn: WORK IN PROGRESS; READY TO GO; USED; or EXPIRED. When a CoS is withdrawn it is not returned to your allocation, nor will you be refunded the fee paid when you assigned the CoS.You should read the Sponsorship policy guidance before withdrawing an unused CoS._________________________________________________________________________________________________________________________________If your search parameters are not specific, you will be presented with a long list of CoS. This screen is not featured in this guide. Select the CoS you wish to withdraw. If your search parameters are specific, you will be presented with the screen below.___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________Guide 4: How to add, amend or delete work addressesFollow the step by step instructions below to add, amend or delete a work address. This function is useful if you wish to store several addresses that you use frequently when creating CoS. Saved addresses will be available from the Pre-stored address drop-down list on the Add or amend a work address screen in all CoS that you create afterwards._________________________________________________________________________________________________________________________________Address__________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________screen,._________________________________________________________________________________________________________________________________Screen example_________________________________________________________________________________________________________________________________ Document reference Miscellaneous CoS functions | Version number 5.0 | Published October 2021 | Manual 10 of 12 | Page 31 of 31。