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Functional Characterization of Negri Bodies (NBs) in Rabies

Functional Characterization of Negri Bodies (NBs) in Rabies
Functional Characterization of Negri Bodies (NBs) in Rabies

J OURNAL OF V IROLOGY,Aug.2009,p.7948–7958Vol.83,No.16 0022-538X/09/$08.00?0doi:10.1128/JVI.00554-09

Copyright?2009,American Society for Microbiology.All Rights Reserved.

Functional Characterization of Negri Bodies(NBs)in Rabies

Virus-Infected Cells:Evidence that NBs Are Sites of Viral

Transcription and Replication?

Xavier Lahaye,1Aurore Vidy,1?Carole Pomier,1Linda Obiang,1Francis Harper,2

Yves Gaudin,1and Danielle Blondel1*

CNRS,UMR2472,INRA,UMR1157,IFR115,Virologie Mole′culaire et Structurale,91198,Gif sur Yvette,France,1and CCNRS, FRE2937,IFR89,Laboratoire de Replication de l’ADN et Ultrastructure du Noyau,94801Villejuif,France2

Received18March2009/Accepted26May2009

Rabies virus infection induces the formation of cytoplasmic inclusion bodies that resemble Negri bodies

found in the cytoplasm of some infected nerve cells.We have studied the morphogenesis and the role of these

Negri body-like structures(NBLs)during viral infection.The results indicate that these spherical structures

(one or two per cell in the initial stage of infection),composed of the viral N and P proteins,grow during the

virus cycle before appearing as smaller structures at late stages of infection.We have shown that the

microtubule network is not necessary for the formation of these inclusion bodies but is involved in their

dynamics.In contrast,the actin network does not play any detectable role in these processes.These inclusion

bodies contain Hsp70and ubiquitinylated proteins,but they are not misfolded protein aggregates.NBLs,in

fact,appear to be functional structures involved in the viral life cycle.Speci?cally,using in situ?uorescent

hybridization techniques,we show that all viral RNAs(genome,antigenome,and every mRNA)are located

inside the inclusion bodies.Signi?cantly,short-term RNA labeling in the presence of BrUTP strongly suggests

that the NBLs are the sites where viral transcription and replication take place.

Viral infection can cause extensive cellular rearrangements leading to the formation of cytoplasmic inclusions that concen-trate viral components.These inclusions are often considered as side-products of the infectious process due to the passive accumulation of large quantities of proteins produced in excess during infection.Nevertheless,in some cases,it has been dem-onstrated that these inclusions are in fact viral factories in which essential events of the viral cycle take place(30,38). Indeed,in these compartments,the high concentration of the viral components increases the ef?ciency of many steps of the viral infection(including transcription and/or replication of the genome and assembly of subviral particles)such that they represent“viral factories.”Such factories have been identi?ed for a variety of unrelated viruses,including large DNA viruses (such as Poxviridae,Iridoviridae,and the closely related African swine fever virus),small DNA viruses(such as adenovirus and poliomavirus),double-stranded RNA viruses(such as rotavi-ruses),and positive-stranded RNA viruses(such as togavirus) (39).

Similar inclusions called aggresomes are formed in response to protein misfolding(7,20).Proteins aggregates of misfolded proteins are toxic to cells and are driven along microtubules to aggresomes for immobilization and subsequent degradation by proteasomes.The similarity between aggresomes and viral in-clusions raises the possibility that viruses hijack the aggresome pathway to facilitate their own replication and assembly(14, 39).Alternatively,aggresomes may be part of the innate cel-lular response that recognizes viral components as foreign or misfolded and targets them for storage and degradation. Rabies virus,the prototype of the lyssavirus genus that be-longs to the Rhabdoviridae family(Mononegavirales order), causes a fatal disease associated with intense viral replication in the central nervous system.Its single-stranded negative-sense RNA genome(?12kb),which encodes?ve viral pro-teins,is encapsidated by the nucleoprotein N(50kDa)to form the nucleocapsid that is associated with the RNA-dependent RNA polymerase L(220kDa)and its cofactor the phospho-protein P(33kDa).Inside the viral particle,this nucleocapsid has a tightly coiled helical structure that is associated with the matrix protein M(22kDa)and surrounded by a membrane containing a unique glycoprotein G(62kDa).The virus enters the host cell through the endosomal transport pathway via a low-pH-induced membrane fusion process catalyzed by glyco-protein G(9).The nucleocapsid released into the cytoplasm serves as a template for transcription and replication processes that are catalyzed by the L-P polymerase complex.During transcription,a positive-stranded leader RNA and?ve capped and polyadenylated mRNAs are synthesized.The replication process yields nucleocapsids containing full-length antigenome-sense RNA,which in turn serve as templates for the synthesis of genome-sense RNA.During their synthesis,both the nas-cent antigenome and the genome are encapsidated by N pro-teins.The neosynthesized genome either serves as a template for secondary transcription or is assembled with M proteins to allow budding of the neosynthesized virion at a cellular mem-brane.Some electron microscopy studies suggest that the bud-

*Corresponding author.Mailing address:CNRS,UMR2472,INRA, UMR1157,IFR115,Virologie Mole′culaire et Structurale,91198,Gif

sur Yvette,France.Phone:33169823837.Fax:33169824308.

E-mail:blondel@https://www.doczj.com/doc/f816764745.html,rs-gif.fr.

?Present address:Max von Pettenkofer Institute fu¨r Virologie,Lud-

wig Maximilians University,Pettenkoferstrasse9a,80336Munich, Germany.

?Published ahead of print on3June2009.

7948

ding step occurs at the level of internal cellular compartments (27,28).

Rabies virus infection induces the formation of cytoplasmic inclusion bodies(IBs)that are called Negri bodies(29).Since these structures are typical of rabies infection of the brain,they have a diagnostic value and have been used as de?nite histo-logical proof of such infection.These spherical structures hav-ing a diameter of a few micrometers(2to10?m)are found in the cytoplasm of some infected nerve cells.By electron micros-copy observations,the Negri bodies were found to be com-posed by a matrix of granular or?lamentous material consist-ing of viral nucleoprotein.Viral particles were also seen budding from this structure(21,22,24).Cytological stainings have shown that they contain nucleic acids,suggesting that they may be replication complexes.However,RNA labeling(with [3H]thymidine or[3H]uridine)failed to detect the IBs,arguing against this conclusion(23).Rabies virus RNA was detected by in situ hybridization in human brain,but no colocalization of viral RNA and Negri bodies have been reported(17,18).

In cultured cells from a neuronal or nonneuronal origin,IBs are also formed during viral infection.Based on their size and shape,it has been considered that these inclusions might be Negri body-like structures(NBLs).

In the present study,we have shown that the IBs formed in infected cells do indeed have similar characteristics to those of Negri https://www.doczj.com/doc/f816764745.html,ing this model,we have been able to study the mechanisms involved in the formation of NBL structures in infected cells and to investigate the role of these IBs during viral infection,revealing that they may be factories where viral RNAs synthesis occurs.

MATERIALS AND METHODS

Cells and viruses.Human neuroblastoma SK cells,human glioblastoma as-trocytoma U373-MG cells and BSR cells cloned from BHK21(baby hamster kidney)were grown in Dulbecco modi?ed Eagle medium supplemented with 10%fetal bovine serum.

The CVS strain of rabies virus was grown in BSR cells.Virus titers were determined by standard plaque assays into BSR cells.

Antibodies and drugs.The mouse polyclonal anti-P antibody has been de-scribed previously and the anti-P monoclonal antibodies(MAbs)25C2and30F2 have been previously described(35).The rabbit polyclonal anti-N antibody conjugated to?uorescein isothiocyanate(FITC)was kindly provided by Pierre Perrin(Institute Pasteur);anti-N MAb62B5was produced in mice immunized with the virus.Rabbit polyclonal anti-P antibody and mouse polyclonal anti-M were obtained by repeated injection of puri?ed recombinant protein produced in Escherichia coli.Anti-G MAb30AA5has been previously described(8).Anti-HSp70MAb(SPA-810)and anti-ubiquitin(SPA-203)were obtained from Stressgen.Anti-bromodeoxyuridine(anti-BrdU)MAb(clone B1C9318)from Roche and anti-?tubulin MAb(N356)from Amersham were used.Fluorescent secondary antibodies were purchased from Molecular Probes,and anti-vimentin (V6630)and phalloidin(P1951)from Sigma.MitoTracker Red was obtained from Invitrogen(M7513).Nocodazole(M1404),paclitaxel(T1402),cytochalasin D(catalog no.30385),latrunculin A(L5163),and actinomycin D(ActD;A9415) were obtained from Sigma;jasplakinolide(420107)was purchased from Calbio-chem.

Plasmids.The Plasmids pCDM8-P encoding the P protein(CVS strain)and pCDM8-N encoding the N protein(CVS strain)have been described previously (3).The plasmid pP-RFP has been generated by cloning?rst the P gene in fusion with the red?uorescent protein(RFP)gene in the plasmid pDsRedM(Clontech; gift of David Pasdeloup,MRC Virology Unit,Glasgow,United Kingdom),and then the fusion product P-RFP was inserted into pcDNA-3vector between NheI and XbaI restriction sites.The plasmid pP?143AQ147A-RFP was obtained from the previous construct pCDM8encoding pP?143AQ147A(33)by using the strategy described above.The dynamitin-green?uorescent protein(GFP)-ex-pressing construct(p50-GFP)was a generous gift from Richard Vallee(Colum-bia University,New York,NY)(5).

Cell infection and transfection.Monolayers of U373-MG cells or BSR cells were grown on sterile glass coverslip in six-well plates(from50to80%con?u-FIG.1.Rabies virus RNA species(genome,antigenome,and mRNAs encoding N,P,M,G,and L proteins)and location of sense and antisense primers(indicated by arrows)used in the FISH exper-iments.Abbreviations:Le,leader;Tr,trailer;An,poly(A).

TABLE1.Sequences of the probes used in the FISH experiments a

FISH probe Sequence(5?-3?biotinylated)First nucleotide position b Leader RNA GCTTTGCAATTGACGCTGTCTTTTTCTTCTTTGATCTGGTTG9

N mRNA CACCTGATTATTGACTTTGAACACAATCTTGTCGGCATCCAT71

P mRNA TATTTGCACTCCAACATTATCCAGGTACGATTGGAACAGGAG1784

M1mRNA AGGAGAGGGCTTTTGAGTGTCCTCATCCCTACATTTTTTCAC2517

M2mRNA CATAGTTGACATGCCCTCGAGTTCGAGTTGATACACCAGATC2996

G1mRNA GCATCCTTCGTCCTCCACTACCAAATTGTTTGGGCAGCTGAG3438

G2mRNA GGATCTCATTCCAAGTTCTGACTGACTTGTAGTGAGCATCGG4348

L1mRNA TGGGTCAATAGGGTCATCATAGACCTCTCCAGGATCGAGCAT5417

L2mRNA GTACTGATACAGAAACTCTAGGATTGCCTCCTCCTGTTGCTC8820

L3mRNA CTGTTATACAGGTCGTGAAGTCTTGCGAAGCTAGGGACGTCA11470

N genome ATGGATGCCGACAAGATTGTGTTCAAAGTCAATAATCAGGTG71

P genome CTCCTGTTCCAATCGTACCTGGATAATGTTGGAGTCCAAATA1784 Antigenome GAGAAAAACAATCTCACACCAGAGGTTCGGATTCAAGATCTT11862

Poly-A d(T)x42

M mRNA VSV CCTAATTTCTTAGATTTCTTAACCTTTCCCCTTCAGACCGAG2271 GADPH mRNA TGGCCAAGGTCATCCATGACAACTTTGGCATTGTGGAAGG

a The name of the probe corresponds to the viral RNA detected(the probe N mRNA is used to detect the N mRNA).

b Nucleotides are numbered according to their distance from the5?end of rabies virus and VSV virus antigenome(positive strand).

V OL.83,2009FUNCTIONAL CHARACTERIZATION OF RABIES VIRUS NEGRI BODIES7949

ence)and infected at different multiplicity of infection(MOI)of rabies virus (CVS strain)and at different times postinfection(p.i.).

U373-MG cells or BSR cells were grown on sterile glass coverslip in six-well plates(from50to80%con?uence)and were transfected with2.5?g or5?g of plasmid DNA by the calcium phosphate coprecipitation procedure.For N and P coexpression,the T7vaccinia virus system was used as described previously(3). Treatments of cells with drugs.Cells were kept in Dulbecco modi?ed Eagle medium containing2?M nocodazole,1.25nM paclitaxel,2.5?M cytochalasin D,1?M latrunculin A,or0.5?M jasplakinolide for1h before virus inoculation and during infection.Since all drugs were reconstituted in dimethyl sulfoxide (DMSO),untreated cells were maintained in medium containing the same con-centration of DMSO.Cells were?xed and processed for microscopy. Immuno?uorescence staining and confocal microscopy.Cells monolayers grown on glass coverslip were?xed20min with4%(wt/vol)paraformaldehyde in phosphate-buffered saline(PBS)and permeabilized for5min in0.1%Triton X-100 in PBS.Cells were then prepared for double-immuno?uorescence staining and analyzed by confocal microscopy.The intracellular distribution of viral antigen P,N, M,and G were analyzed by using the speci?c antibody at the dilution of1/500to 1/1,000,followed by incubation with the corresponding immunoglobulin G(IgG) antibody conjugated to Alexa568or Alexa488at the dilution of1/1,000.The cells were mounted onto glass slides by using Immu-Mount(Shandon)containing DAPI (4?,6?-diamidino-2-phenylindole)to stain nuclei.

Confocal laser microscopy was performed on a Leica SP2microscope(?63 oil-immersion objective lens)using UV excitation at351nm(DAPI)and blue laser excitation at488nm(Alexa488)and green laser excitation at545nm (Alexa568)in sequential recording mode.

Sellers’staining.Infected cells grown on coverslips were stained with a mix-ture of saturated solution of basic fuschin and methylene blue dissolved in methanol as described by Sellers in1927(40).Cells were?xed and permeabilized with methanol at?20°C,dipped into the staining solution for several seconds, and then washed with water.Cells were observed under a light microscope. Quanti?cation of Negri body-like structures.BSR cells were infected with CVS at different MOIs(0.5,1,3,5,and10)in the presence or not of nocodazole (2?M).Cells were?xed and permeabilized at different times p.i.(4to16h).The viral N protein was stained by a rabbit polyclonal anti-N conjugated to FITC. Quanti?cation of IBs was performed by counting the viral inclusions(containing the N protein)present in infected cells.An average of400cells from three independent experiments were counted at each time p.i.and for each MOI.The results are expressed as a percentage of uninfected cells and cell containing one, two,three,four,and more IBs.

Poisson distribution predicts that the relative frequency(p)of one cell to be infected by n virus at an MOI of?is p(n)?(e????n)/n!.

FISH.Fluorescence in situ hybridization(FISH)was performed by using3?biotinylated oligonucleotides(biotin569.61,obtained from Eurogentec)(42 nucleotides)complementary to speci?c sequences of viral RNA(Table1and Fig.1).According to the amount of viral RNA expected to be present during rabies virus infection,the number of probes mixed during hybridization was different:the NmRNA and PmRNA were detected by using one probe,the MmRNA and GmRNA were detected by using a mixture of two probes(M1 and M2or G1and G2),the LmRNA was detected by using three probes(L1, L2,and L3),and the genome was detected by using a mixture of two probes. The probe used to detect the antigenome was designed in order to avoid the detection of the mRNA,whereas the probe used to detect the mRNA hy-bridizes also to the antigenome.

Infected cells grown on coverslips were?xed with paraformaldehyde and permeabilized as described above.After treatment with200U of DNase I

FIG.2.Characterization of the viral IBs.(A)BSR cells were in-fected with rabies virus(CVS strain)at an MOI of3for16h and stained by the Sellers’staining protocol as described in Materials and Methods.Viral IBs are indicated pointed by arrows(left panel).A higher magni?cation of an area is also presented(right panel).The scale bar corresponds to12?m.(B)BSR cells were infected as de-scribed above.After?xation and permeabilization,cells were pro-cessed for double-immuno?uorescence staining with a rabbit poly-clonal anti-P antibody(P)and the MAb62B5anti-N antibody(N),a mouse polyclonal anti-M antibody(M),or the MAb30AA5anti-G antibody(G).In all cases,DAPI(blue)was used to stain the nuclei (merge).Colocalization is apparent as yellow coloration in the merged panel.The scale bars correspond to12?m.(C)Infected BSR cells as described above were treated for immunogold labeling.P protein was detected by using two MAbs,25C2and30F2;N protein was detected by using MAb64B6;and M and G proteins were detected by using mouse polyclonal anti-M antibody and by anti-G MAb30AA5,respec-tively.The scale bars correspond to0.5?m.

7950LAHAYE ET AL.J.V IROL.

(RNase-free D7201;Sigma)/ml,cells were prehybridized in hybridization buffer (50%formamide,10%dextran sulfate,4?SSC [1?SSC is 0.15M NaCl plus 0.015M sodium citrate])for 30min at 37°C before being incubated with 10?l of hybridization mix containing 10ng of biotinylated probe,10?g of herring testis DNA,and 8.5?l of hybridization buffer for 2min at 95°C in presence or not of 15U of RNase A (catalog no.10109142001;Roche)/ml.Coverslips were then put in a humidi?ed hybridization chamber at 37°C overnight and washed three times at 42°C for 5min with 50%formamide–2?SSC and then three times at 42°C with 0.5?SSC.Cells were then processed for immuno?uorescence staining.The N protein was stained with a mouse MAb anti-N (62B5)antibody,followed by incubation with Alexa 488-goat anti-mouse IgG.Viral biotinylated RNA were detected by incubation with streptavidin conjugated to cyanin 3(Cy3;catalog no.016160081;Jackson Immunotech).

BrUTP labeling of viral RNA.BrUTP incorporation of newly synthezised viral RNA was performed as described by Georgi et al.(11).Brie?y,the infected cells (16h p.i.)were treated with 15?g of ActD/ml for 1h and then transfected with BrUTP (B 7166;Sigma)at a ?nal concentration of 10mM by using Lipo-fectamine 2000(Invitrogen)and maintained in the presence of ActD for 20min.The cells were ?xed and permeabilized as described above and processed for immuno?uorescence.P protein was detected by using the rabbit polyclonal anti-P antibody,followed by incubation with Alexa 568-conjugated goat anti-rabbit IgG.The BrUTP-labeled RNAs were stained by using mouse MAb to BrdU at a dilution of 1/50,followed by the addition of goat anti-mouse Alexa 488-conjugated antibody.

Electron microscopy.For structural analysis,infected BSR cells were ?xed for 1h at room temperature with 2%glutaraldehyde (Sigma)in 0.1M cacodylate buffer (pH 7.4;Sigma).Cells were washed with 0.1M sucrose (Sigma)in 0.1M cacodylate buffer (pH 7.4).Cells were then post?xed for 1h at room temperature with 1%aqueous osmium tetroxide (OsO 4)and 1.5%potassium ferrocyanide (Sigma)in 0.1M cacodylate buffer (pH 7.4)and stained with 2%uranyl acetate in water.The cells were then dehydrated in increasing concentrations of ethanol and embedded by Epon with 2,4,6-tris(dimethylaminomethyl)phenol (DMP30;Delta Microscopies).Polymerization was carried out for 48h at 60°C.Ultrathin

sections of Epon-embedded material were collected on copper palladium grids (200mesh)and stored until use.These sections were stained with lead citrate (Delta Microscopies).Sections were examined with a Zeiss EM902electron microscope operated at 80kV,and images were acquired with a charge-coupled device camera (Megaview III)and analyzed with ITEM software (Elo?se,France;MIMA2platform [INRA-CRJ]).

For immunogold detection of rabies virus protein,cells were ?xed for 1h at 4°C with 4%formaldehyde (Merck)in 0.1M phosphate buffer (pH 7.3).During ?xation,cells were scraped and centrifuged.Pellets were dehydrated in increas-ing concentrations of methanol and embedded in Lowicryl K4M (Chemische Werke Lowi)at a low temperature according to the method of Roth et al.(36).Polymerization was carried out for 5days at ?30°C under long-wavelength UV light (Phillips ?uorescent tubes [TL 6W]).Ultrathin sections of Lowicryl-embed-ded material were collected on carbon-coated gold grids (200mesh)and stored until use.For immunogold labeling,grids bearing Lowcryl thin sections of in-fected cells were ?rst placed for 2min over drops of bovine serum albumin (5%PBS).The grids were then ?oated for 2h,at room temperature,on drops of af?nity puri?ed mouse monoclonal or polyclonal anti-rabies virus proteins anti-bodies (diluted 1/20in PBS)or over normal mouse serum as control (diluted 1/20in PBS).After 15-min washes with 3drops of PBS,the grids were incubated for 30min over drops of a 1/30dilution in PBS of goat anti-mouse IgG conjugated to gold particles (10nm in diameter;Biocell Research Laboratories).After 5-min passages on 3drops of PBS,the grids were rapidly rinsed in jet-distilled water,air dried,and stained for 10min with 5%aqueous uranyl acetate.Grids were observed with a Philips 400transmission electron microscope,at 80kV at magni?cations of ?8,000to 22,000.

RESULTS

Characterization of the IBs found in rabies virus-infected cells.Rabies virus infection induces the formation of round IBs in the cytoplasm of neuronal and nonneuronal cells.We

ob-

FIG.3.Evolution of the viral IBs during the viral cycle.(A)BSR cells were infected by CVS at an MOI of 3for different times p.i.as indicated and stained with rabbit polyclonal anti-N conjugated to FITC antibody and DAPI.The scale bars correspond to 12?m.(B and C)The numbers of IBs per cell were quanti?ed at different times p.i.for an MOI of 3(B)or an MOI of 10(C).A histogram represents the average values from three independent experiments by counting 400cells per experiment.The results are indicated as the percentages of cells that were uninfected or that contained one,two,three,four,and more IBs and are depicted by six variously shaded columns from left to right,respectively,for each time point.Error bars indicate the standard deviations.

V OL .83,2009FUNCTIONAL CHARACTERIZATION OF RABIES VIRUS NEGRI BODIES 7951

served IBs in infected BSR cells (Fig.2).Consistent with the known properties of Negri bodies,these inclusions could be stained with the Seller’s solution containing the dye,basic fuschin (40)(Fig.2A).

Unsurprisingly,confocal and electron microscopy analyses revealed that the IBs are full of N and P proteins (Fig.2B and C).It has also been shown that the polymerase L is present in the IBs (6).In contrast and as expected,the M and G proteins were excluded from these structures,as indicated by the fact that IBs were neither labeled by a polyclonal serum against the M protein nor by an MAb directed against the G protein (Fig.2B and C).Thus,the staining characteristics,the size (a few micrometers),and the shape,as well as the viral protein com-position of the IBs formed in infected BSR cells,indicated that these structures share the de?ned features as Negri bodies and can thus be considered NBLs.

Morphogenesis of the NBLs during viral infection.Little is known about the formation and evolution of Negri bodies during viral infection.Our model system permits us to perform such characterization.This is the ?rst point that we have ad-dressed.

BSR cells or human neuroblastoma SK cells were infected at different MOIs (0.5to 10)and analyzed at different times p.i.by immuno?uorescence using anti-N or anti-P antibodies.At different times p.i.,IBs in the cytoplasm of cells infected at different MOIs were counted.At an early stage of infection (4h p.i.),infected cells presented one or two viral inclusions that then grew in size (10to 12h p.i.)(Fig.3A).These values were observed regardless of the MOI used (between 3and 10).Smaller IB structures appeared at later stage of infection (16to 20h p.i.)(Fig.3A).

The number of NBLs per cell was independent of the MOI and consequently was independent of the number of incoming virus per cell (Fig.3B and C)that was expected to follow a Poisson distribution as mentioned in the Materials and Meth-ods.These results suggest that there are a limited number of sites per cell that allow the formation of IBs.

The morphogenesis and structural evolution of NBLs were also analyzed in infected BSR cells by electron microscopy (Fig.4).NBLs are spherical structures (a few micrometers in size)that often contain a cavity.Although initially devoid of membranes (4to 12h p.i.,Fig.4A),NBLs progressively be-came associated with a double membrane (16h p.i.,Fig.4B and C).The cytoplasmic granular surface of the membrane suggests that it might be derived from rough endoplasmic re-ticulum (Fig.4C).Finally,NBLs were completely surrounded by these double membranes (16to 24h p.i.).This membrane organization is reminiscent of the organization of the

double

FIG.4.Morphology and evolution of viral IBs.Ultrastructural aspect of BSR cells infected for 12h (A),16h (B and C),and 24h (D and E)p.i.as indicated.Double ?xation was performed with glutaraldehyde and osmium tetraoxide .Epon embedding and uranium-lead staining.IBs display a granular dense structure with a cavity (indicated by arrows in panels A,B,C,and E).Note the recruitment of membranes around IBs at 16h p.i.(B and C)and the presence of virus particles close to the viral inclusion at 24h p.i.(indicated by arrow in panel D).Nu,nucleus;Cy,cytoplasm.Bars correspond to 0.5?m.Higher magni?cation (?13)of two membrane areas reveals a double-membrane with a granular surface are shown for panel C.

7952LAHAYE ET AL.J.V IROL .

membrane around the cell nucleus.After24h p.i.,the shape of the bodies appeared to be altered,and viral particles were also seen budding from some of these structures(Fig.4D and E), most probably inside the lumen of the compartments that surround the bodies.

Comparison of the NBLs and aggresomes.Aggresomes are misfolded protein aggregates that appear when the protea-some and chaperones can no longer deal with the aggregated proteins.They are driven on microtubules to the microtubule organizing center(MTOC),they are surrounded by vimentin cages to isolate and reduce the toxicity of misfolded proteins, and they recruit mitochondria that may provide the ATP re-quired by chaperones and proteasomes for protein folding and degradation(7,20).For many viral families,it has been pro-posed that the aggresome pathway is hijacked in order to concentrate viral components and to facilitate viral replication and assembly(14,39).Therefore,we investigated whether NBLs share the characteristics of aggresomes described above. We observed that NBLs do not colocalize with the MTOC,as revealed by anti-?-tubulin staining(Fig.5A).Costaining with anti-vimentin antibodies did not show any rearrangement of vimentin around the cytoplasmic inclusions at any stage of infection(Fig.5A).Furthermore,we did not observe recruit-ment of mitochondria in close proximity to the NBLs(Fig.5A). However,Hsp70chaperone and ubiquitinylated proteins accu-mulate inside the IBs,as revealed by an anti-Hsp70and anti-poly-ubiquitin staining,respectively(Fig.5B).These results indicate that the NBLs do not share all of the features of aggresomes,although they contain Hsp70and ubiquitinylated proteins.

Role of the cytoskeleton in the morphogenesis of NBLs.We next investigated the mechanism by which the different pro-teins gather and are recruited in NBL structures by analyzing the role of the cytoskeleton in the morphogenesis and evolu-tion of the IBs.

We studied the role of the microtubule network by using two different speci?c inhibitors of MT dynamics(nocodazole and paclitaxel).BSR or U373-MG infected cells(MOI?3and MOI?10)were treated with nocodazole,which results in the disruption of microtubules,for1h before virus inoculation and during infection.In the presence of nocodazole,the“early”(large,one or two per cell)NBLs formed ef?ciently without any apparent delay(Fig.6).These results indicate that micro-tubules are not needed for the IB formation.

In striking contrast,the formation of“late”(small)IBs was affected by nocodazole treatment since at later stages of infec-tion(16to20h p.i.),we observed NBLs that were much larger than those in the absence of the drug.Furthermore,at these late stages,no smaller structures were observed in nocodazole-treated cells(Fig.6).This was in contrast to untreated cells where small IBs(more than15per cell)were detected.Thus, the drug inhibited the formation of additional IBs and/or the appearance of smaller structures.

We did not observe any effect of paclitaxel,a drug that stabilizes microtubules,on the formation and evolution of IBs (data not shown).This suggests that the mechanisms involved in these processes do not require dynamic microtubules.

As P protein has been shown to interact with LC8,the light chain of the molecular motor dynein(19,34),we checked whether this interaction plays a role in the targeting of the major P component to the viral inclusions.When cells were infected and transfected with the plasmid encoding the P pro-tein mutant unable to interact with LC8(P?LC8-RFP)(33), RFP?uorescent viral inclusions were formed as in cells in-fected and transfected with the plasmid encoding the wild-type P-RFP protein(Fig.7A).This indicates that LC8is not re-quired in the recruitment of P inside the IBs.This is consistent

FIG.5.Viral IBs exhibit some features of aggresomes but are dis-

tinct structures.(A)BSR cells were infected for16h and costained

with a rabbit polyclonal anti-P antibody(P)and either mouse anti-?

tubulin MAb(Tub),mouse anti-vimentin MAb(Vim),or the Mito-

Tracker Red(Mito),followed by incubation with Alexa488-goat anti-

rabbit IgG and Alexa568-goat anti-mouse IgG.Note that IBs are not

localized at the MTOC(indicated by arrows)and that no vimentin

cage or no recruitment of mitochondria(as would be expected for

aggresomes)are observed around the IBs.(B)IBs contain Hsp70and

ubiquitinylated proteins.Infected BSR cells were immunostained with

a rabbit polyclonal FITC-conjugated anti-N antibody(N)and a mouse

MAb anti-ubiquitin antibody(Ub)or a mouse MAb anti-Hsp70anti-

body(Hsp70),followed by incubation with Alexa568-goat anti-mouse

IgG.The scale bars correspond to12?m.

V OL.83,2009FUNCTIONAL CHARACTERIZATION OF RABIES VIRUS NEGRI BODIES7953

with the fact that overexpression of the inhibitor of dynein-mediated transport,dynamitin (dynamitin-GFP)during infec-tion did not result in the inhibition of the formation of viral inclusions (Fig.7B).

The role of actin was also investigated in BSR cells or in U373-MG cells by using inhibitors resulting in depolymeriza-tion of actin (cytochalasin D and latrunculin A)or resulting in stabilization of actin (jasplakinolide).None of the inhibitors signi?cantly affected the formation and evolution of NBLs,indicating that actin ?laments are not required in these pro-cesses.

NBLs are potential sites of viral transcription and replica-tion.We then analyzed whether NBLs are functional struc-tures where some essential steps of the virus cycle take place.Since the viral N,P,and L proteins involved in viral transcrip-tion and replication accumulate in IBs,we investigated the presence of viral RNA in these structures by using FISH.We therefore designed biotinylated oligonucleotide probes to de-tect speci?cally viral mRNAs,antigenomic RNA,and genomic RNA (Table 1and Fig.1).

After 16h of infection,BSR cells were simultaneously pre-pared for FISH to detect the viral RNA and immunostained with anti-N antibody to visualize the Negri bodies.

All viral mRNAs encoding the ?ve viral proteins (N,P,M,G,and L)were detected inside the IBs with no viral mRNA readily detected elsewhere (i.e.,nucleus/cytoplasm)outside of IBs (Fig.8A).The relative quantities of the viral RNAs were determined (Fig.8D).Although the FISH method does not allow a precise quanti?cation,it clearly indicated that the N mRNA was more abundant than the L mRNA according to the known gradient of decreasing mRNAs concentration that re-?ects the gene order (N,P,M,G,and L)(1).These hybrid-izations were speci?c since no positive signal was observed in mock-infected cells (data not shown)or in infected cells treated with a probe detecting the mRNA of the M protein of vesicular stomatitis virus (VSV)(Fig.8C).A positive control carried out in infected cells with a poly(dT)probe or a probe against the housekeeping GADPH mRNA gave rise to a signal diffusely distributed in the nucleus and the cytoplasm as ex-pected (Fig.8C).RNase A treatment of infected cells prior to FISH with poly(dT)probe prevented the hybridization signal in the nucleus and the cytoplasm but left intact the signal in the IBs (Fig.8C).These results indicate that the viral mRNA accumulate inside the IBs and are protected against RNase digestion,most probably by the cage formed by the N and P proteins.Indeed,the N protein formed an apparent ringlike structure (cage)around the RNA (Fig.2B and Fig.8A).

By using speci?c probes,the viral genomic RNA and

anti-

FIG.6.Effect of nocodazole on formation and evolution of IBs during infection.(A)BSR cells were infected and treated with nocodazole (2?M;NCZ)or mock treated (DMSO).At different times p.i.as indicated,the cells were costained with rabbit polyclonal anti-N conjugated to FITC antibody and with mouse MAb anti-?tubulin antibody,followed by incubation with Alexa 568-goat anti-mouse IgG.The scale bars correspond to 12?m.(B and C)The numbers of IBs per cell were quanti?ed in nocodazole-treated cells at different times p.i.as indicated for an MOI of 3(B)or an MOI of 10(C).A histogram represents the average values from three independent experiments by counting 400cells per experiment.The results are expressed as the percentages of uninfected cells or cells containing one,two,three,four,and more IBs and are depicted by six variously shaded columns from left to right,respectively,for each time point.Error bars indicate the standard deviation.

7954LAHAYE ET AL.J.V IROL .

genomic RNA were also detected exclusively in the IBs(Fig. 8B).The relative quanti?cation of the viral RNAs indicated that the amount of genomic RNA is higher than the amount of antigenomic RNA(Fig.8D).

The experiments described above demonstrated that NBLs are structures where viral transcription and replication prod-ucts accumulate.In order to establish whether the viral RNAs are synthesized inside IBs or synthesized outside IBs and then translocated into these structures,we performed short-term RNA labeling in the presence of BrUTP and ActD to inhibit cellular transcription.Cells were infected for16h before treat-ment without or with ActD for1h and transfected with BrUTP for20min.Cells were then examined by double-immuno?uo-rescence staining using anti-BrdU and anti-P antibodies(Fig.

9).Without ActD,cellular RNA was mainly detected in the nucleus,as expected(Fig.9A,upper panel).In the presence of the drug,newly synthesized RNA were detected inside the viral inclusions(Fig.9A,lower panel).Control experiments were performed in which rabies virus N and P proteins were coex-pressed(with the vaccinia virus T7system)to mimic NBLs,as previously shown(3),and provide nonviral IBs.The fact that no BrUTP signal was detected in these nonviral IBs in the presence of the drug indicated that the BrUTP signals were dependent on the incorporation of BrUTP by the rabies virus RNA polymerase(Fig.9B).These results provide evidence that NBs are functional structures where viral transcription and replication take place.

DISCUSSION

The present study characterizes the morphogenesis and functions of the IBs that are found in the cytoplasm of cells infected by rabies virus.We show that these IBs have staining characteristics that are similar to those of the Negri bodies found in certain nerve cells infected by rabies virus.These structures are not canonical aggresomes containing misfolded proteins aggregates en route to degradation by the proteasome (consistent with the observations of Menager et al.[26])but are functional structures with a central role in viral infection. The detection of viral RNA in IBs indicates either that viral RNAs are synthesized within IBs or are synthesized elsewhere before import and accumulation within IBs.Our?ndings indi-cate that the former is the case and that Negri bodies are most probably specialized sites of viral transcription and replication. Signi?cantly,the labeling period used in the BrUTP experiments is short compared to the duration of viral mRNA synthesis.In-deed,it has been reported that due to a quite slow elongation rate of transcription(3.1to4.3nucleotides),it takes about10min for the VSV N mRNA and1to2h for the LmRNA to be synthesized (16).This is also consistent with the elongation rates recently reported for another Mononegavirales,the measles virus(three nucleotides)(32).Thus,the newly BrUTP-labeled RNAs are al-most certainly synthesized within NBLs(during the20-min label-ing period),as indicated by the BrUTP labeling experiment pre-viously used for VSV(4).

This would be consistent with the fact that proteins L,P, and N involved in viral RNA synthesis are accumulated in these structures.Interestingly,viral genomes,antigenomes, and mRNAs synthesized inside the IBs appear to be sur-rounded by a cage formed by N and P proteins that may protect them from degradation.We did not investigate whether NBLs are also sites of viral protein synthesis.Whether the viral proteins L,N,and P are translated inside or at the periphery of the viral inclusions or anywhere else,and in this latter case how these proteins are recruited in such IBs,re-mains an open question.Cellular proteins are also detected in these structures.Although the exact composition of the NBLs remains unknown,the Toll-like receptor3has been shown to be an important compound of the NBLs(26).In addition,the heat shock protein Hsp70and ubiquitinylated proteins,which are also found associated with aggresomes,were accumulated inside these structures.This enrichment might be correlated with an intense production of viral proteins(particularly N and P)in these viral factories.However,in addition to continuously surveying the folding status of proteins as part of its quality control function,Hsp70is also involved in many cellular pro-cesses such as cell cycle,apoptosis,or innate immunity(25). Similarly,ubiquitinylation of proteins is also involved in many cellular functions other than degradation,such as signalization events.Since viruses need to interfere with cellular processes to create a favorable environment for their multiplication, Hsp70and ubiquitin ligases are frequently diverted and re-cruited by viruses(2,25).In the case of rabies virus infection,

FIG.7.Formation of IBs does not require dynein-mediated trans-

port.(A)BSR cells were transfected with a plasmid encoding the

P-RFP or a P-RFP mutant that does not interact with LC8(P?LC8-

RFP)and then infected for24h.Cells were stained with the MAb

62B5anti-N antibody(N),followed by incubation with Alexa488-goat

anti-mouse IgG and DAPI(merge).The scale bars correspond to12

?m.(B)BSR cells were transfected with a plasmid encoding dyna-

mitin-GFP and then infected for24h.Cells were stained with a rabbit

polyclonal anti-P antibody(P),followed by incubation with Alexa

568-goat anti-rabbit IgG and DAPI(merge).Colocalization is appar-

ent as yellow coloration in the merged panel.The scale bars corre-

spond to12?m.

V OL.83,2009FUNCTIONAL CHARACTERIZATION OF RABIES VIRUS NEGRI BODIES7955

7956LAHAYE ET AL.J.V IROL.

Hsp70might play a proviral role,as previously indicated by the

presence of Hsp70in puri?ed rabies virus(37).In addition,

NEDD4,an E3ubiquitin ligase,is recruited by rabies virus

matrix protein via a PPXY motif and is involved in the budding

process(13,15).

Electron-microscopy studies indicate that viral inclusions

initially devoid of membranes recruit cellular membranes,sug-

gesting that the budding step could occur inside intracellular

compartment derived from the rough endoplasmic reticulum

and wrapped around IBs as previously shown(24).

The fact that IBs may support viral transcription and repli-

cation leads us to consider that such structures may form

around incoming genomes.Our results indicate that early after

infection,infected cells contain one or two viral factories.This

limited initial number of formation sites is independent of the

MOI and consequently is independent of the number of in-

coming viruses per cell.The mechanism involved in this re-

striction is not known,but it might occur at the cell entry to

limit the number of incoming viral particles and/or inside the

cytoplasm to reduce the number of functional transcription

and replication sites.It is also possible that a viral factory arises

from many incoming genomes.The restriction would then be

due to the requirement of speci?c cellular structures or or-

ganelles(present in a limited number in the cell)for the IBs to

form.

We did not observe any preferential intracellular localiza-

tion of the viral inclusions in the cells such as the MTOC,

where aggresomes are typically located,as well as some other

viral factories(31).The lack of a link between MTOC and

rabies viral factories is consistent with the fact that microtubule

networks are not involved in the morphogenesis of NBLs that

are formed ef?ciently and without any delay in the presence

of an inhibitor of microtubule polymerization.Furthermore,

FIG.8.Viral RNAs accumulate in viral IBs.BSR cells were in-

fected(MOI?3)for16h p.i.(A and B)FISH analyses were per-

formed with biotinylated oligonucleotides(described in Materials and

Methods),followed by incubation with streptavidin conjugated to Cy3

to detect NmRNA,PmRNA,MmRNA,GmRNA,and LmRNA as

indicated(A)and to detect viral genomic and antigenomic RNA as

indicated(B).Note that the probe used to detect the mRNA also

allows the detection of the antigenome.In contrast,the probe used to

detect the antigenome was designed in order to avoid the detection of

the mRNA.Note that for the antigenomes,the photomultiplier tube

(PMT)has been increased in order to clearly visualize the?uorescence

signals resulting in an increase of the background signal.No positive

signal was observed in mock-infected cells(indicated by an arrow).

(C)FISH was also performed to detect the housekeeping GADPH

mRNA or cellular mRNA(Poly-A)after treatment with RNase

(?RNase)or without RNase(–RNase).No signal was observed with a

control probe complementary to the MmRNA of VSV.In all cases,the

N protein(N)was stained with the mouse MAb anti-N(62B5)anti-

body,followed by incubation with Alexa488-goat anti-mouse IgG(A,

B,and C).The scale bars correspond to12?m.(D)Relative quanti-

?cation of the viral RNA accumulated inside the Negri bodies.FISH

was performed as described above.Quanti?cation of Cy3?uorescent

intensity(arbitrary units[ua])was performed with the same PMT(the

PMT adjusted with the N mRNA probe)on a Leica SP2confocal

microscope.The surface area and the Cy3?uorescence intensity of

each Negri body was calculated by using Leica confocal software.Two

independent experiments were performed by counting an average of

300IBs.The results were expressed as the log10of Cy3’s intensity per

?m2of Negri body and per probe(ua/?m2).

overexpression of dynamitin that blocks dynein/dynactin-me-diated retrograde transport along microtubules has no effect on the morphogenesis of viral inclusions.All of these data indicate that the mechanism to gather the different viral and cellular components in viral inclusions does not require an active cellular transport along the microtubules.

Although microtubule depolymerization does not inhibit the formation of Negri bodies,it prevents the appearance of smaller IBs that otherwise form late in infection.Further ex-periments are required to establish whether these small inclu-sions are derived from the initial IBs or may be newly formed by infection at a later stage by new viral progeny or just by delayed formation.In contrast,the actin network does not play a prominent role in these processes.

It is possible that NBLs might be the result of a cytoplasmic compartmentalization due to a cellular defense mechanism involving components of the aggresome pathway,such as host factors involved in stress response,the storage or degradation of proteins to target virus components for storage,and degra-dation,as previously suggested for other viruses.These struc-tures may be hijacked by the rabies virus to concentrate host and viral components in one place to facilitate viral replication, to immobilize and inactivate proteins that would otherwise inhibit infection,and also to mask rabies virus presence from the cellular components of the innate immune system.This is consistent with the?ndings of Menager et al.(26),who sug-gested that the sequestration of Toll-like receptor3in the Negri body could be a strategy whereby the virus prevents the antiviral or apoptotic effect of this cellular protein.Cytoplas-mic inclusions have been reported for?loviruses(10)and some paramyxoviruses(12),suggesting that virus-induced formation of intracellular compartments might be general among viruses of the Mononegavirales order that contains numerous human and animal pathogens.It is probable that the mechanisms and the machineries hijacked by rabies virus are similarly diverted by these other viruses.

ACKNOWLEDGMENTS

We are grateful to Greg Moseley(from Monash University,Clayton, Victoria,Australia)for helpful discussions and careful reading of the manuscript.We thank Manos Mavrakis for helpful discussions.We thank David Pasdeloup for providing the plasmid pDsRedM and for technical advice for the FISH.We acknowledge Richard Vallee for the gift of the plasmid encoding dynamitin-GFP.We acknowledge Christine Longin for helpful advice and assistance with the electron microscopy(Unite′UR1196Ge′nomique et Physiologie de la Lac-tation,INRA,Plateau de Microscopie Electronique MIMA2,Jouy-en-Josas Cedex,France).Confocal microscopy was performed on the Plate-forme Imagerie et Biologie Cellulaire of the CNRS cam-pus supported by the Institut Fe′de′ratif de Recherche87,La Plante et Son Environnement,and the program ASTRE of the Conseil Ge′ne′ral de l’Essonne.

We acknowledge support from the CNRS and INRA.

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关于时间管理的英语作文 manage time

How to manage time Time treats everyone fairly that we all have 24 hours per day. Some of us are capable to make good use of time while some find it hard to do so. Knowing how to manage them is essential in our life. Take myself as an example. When I was still a senior high student, I was fully occupied with my studies. Therefore, I hardly had spare time to have fun or develop my hobbies. But things were changed after I entered university. I got more free time than ever before. But ironically, I found it difficult to adjust this kind of brand-new school life and there was no such thing called time management on my mind. It was not until the second year that I realized I had wasted my whole year doing nothing. I could have taken up a Spanish course. I could have read ten books about the stories of successful people. I could have applied for a part-time job to earn some working experiences. B ut I didn’t spend my time on any of them. I felt guilty whenever I looked back to the moments that I just sat around doing nothing. It’s said that better late than never. At least I had the consciousness that I should stop wasting my time. Making up my mind is the first step for me to learn to manage my time. Next, I wrote a timetable, setting some targets that I had to finish each day. For instance, on Monday, I must read two pieces of news and review all the lessons that I have learnt on that day. By the way, the daily plan that I made was flexible. If there’s something unexpected that I had to finish first, I would reduce the time for resting or delay my target to the next day. Also, I would try to achieve those targets ahead of time that I planed so that I could reserve some more time to relax or do something out of my plan. At the beginning, it’s kind of difficult to s tick to the plan. But as time went by, having a plan for time in advance became a part of my life. At the same time, I gradually became a well-organized person. Now I’ve grasped the time management skill and I’m able to use my time efficiently.

英语演讲稿:未来的工作

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